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6DOM

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 50 mM K+ for 120 s at 21 C

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Ribonuclease Hpolymer13615716.71UniProt (Q9KEI9)Bacillus haloduransRNase H
2B
(B)
5'-R(*AP*CP*AP*U)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3'polymer41224.81synthetic construct
3C
(b)
5'-R(P*CP*G)-3' portion of cleaved RNA (5'-R(*AP*CP*AP*UP*CP*G)-3')polymer2605.41synthetic construct
4D
(C)
DNA (5'-D(*CP*GP*AP*TP*GP*T)-3')polymer61824.21synthetic construct
5E, Q
(A, b)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
6F, G, R
(A, C)
POTASSIUM IONnon-polymer39.13Chemie (K)
7H, I, J
(A)
IODIDE IONnon-polymer126.93Chemie (IOD)
8K, L, M, N, O
(A)
GLYCEROLnon-polymer92.15Chemie (GOL)
9P, S
(A, C)
1,2-ETHANEDIOLnon-polymer62.12Chemie (EDO)
10T, U, V, W
(A, B, b, C)
waterwater18.0193Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight19371.2
Non-Polymers*Number of molecules15
Total formula weight1131.2
All*Total formula weight20502.4
*Water molecules are not included.

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PDB entries from 2025-12-10

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