6DNH
Cryo-EM structure of human CPSF-160-WDR33-CPSF-30-PAS RNA complex at 3.4 A resolution
Replaces: 6BLLEntity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Cleavage and polyadenylation specificity factor subunit 1 | polymer | 1443 | 161074.2 | 1 | UniProt (Q10570) Pfam (PF10433) Pfam (PF03178) In PDB | Homo sapiens (Human) | Cleavage and polyadenylation specificity factor 160 kDa subunit, CPSF 160 kDa subunit |
2 | B | pre-mRNA 3' end processing protein WDR33 | polymer | 587 | 67546.8 | 1 | UniProt (Q9C0J8) Pfam (PF00400) In PDB | Homo sapiens (Human) | WD repeat-containing protein 33, WD repeat-containing protein WDC146 |
3 | C | Cleavage and polyadenylation specificity factor subunit 4 | polymer | 245 | 27646.1 | 1 | UniProt (O95639) Pfam (PF00642) Pfam (PF00098) Pfam (PF15663) In PDB | Homo sapiens (Human) | Cleavage and polyadenylation specificity factor 30 kDa subunit, CPSF 30 kDa subunit, NS1 effector domain-binding protein 1, Neb-1, No arches homolog |
4 | E | RNA (5'-R(P*AP*AP*UP*AP*AP*AP*C)-3') | polymer | 17 | 5361.3 | 1 | Simian virus 40 | ||
5 | C | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) |
Sequence modifications
B: 1 - 572 (UniProt: Q9C0J8)
C: 1 - 244 (UniProt: O95639)
PDB | External Database | Details |
---|---|---|
Met -14 | - | expression tag |
Gly -13 | - | expression tag |
Ser -12 | - | expression tag |
Ser -11 | - | expression tag |
His -10 | - | expression tag |
His -9 | - | expression tag |
His -8 | - | expression tag |
His -7 | - | expression tag |
His -6 | - | expression tag |
His -5 | - | expression tag |
Ser -4 | - | expression tag |
Ser -3 | - | expression tag |
Gly -2 | - | expression tag |
Leu -1 | - | expression tag |
Val 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 261628.4 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 196.2 | |
All* | Total formula weight | 261824.6 |