6DHG
RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom resolution
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, U (A, a) | Photosystem II protein D1 1 | polymer | 334 | 37059.3 | 2 | UniProt (P0A444) Pfam (PF00124) | Thermosynechococcus elongatus (strain BP-1) | PSII D1 protein 1,Photosystem II Q(B) protein 1 |
| 2 | B, V (B, b) | Photosystem II CP47 reaction center protein | polymer | 505 | 56096.8 | 2 | UniProt (Q8DIQ1) Pfam (PF00421) | Thermosynechococcus elongatus (strain BP-1) | PSII 47 kDa protein,Protein CP-47 |
| 3 | C, W (C, c) | Photosystem II CP43 reaction center protein | polymer | 451 | 49207.3 | 2 | UniProt (Q8DIF8) Pfam (PF00421) | Thermosynechococcus elongatus (strain BP-1) | PSII 43 kDa protein,Protein CP-43 |
| 4 | D, X (D, d) | Photosystem II D2 protein | polymer | 341 | 38275.8 | 2 | UniProt (Q8CM25) Pfam (PF00124) | Thermosynechococcus elongatus (strain BP-1) | PSII D2 protein,Photosystem II Q(A) protein |
| 5 | E, Y (E, e) | Cytochrome b559 subunit alpha | polymer | 82 | 9378.6 | 2 | UniProt (Q8DIP0) Pfam (PF00283) Pfam (PF00284) | Thermosynechococcus elongatus (strain BP-1) | PSII reaction center subunit V |
| 6 | F, Z (F, f) | Cytochrome b559 subunit beta | polymer | 34 | 3868.6 | 2 | UniProt (Q8DIN9) Pfam (PF00283) | Thermosynechococcus elongatus (strain BP-1) | PSII reaction center subunit VI |
| 7 | AA, G (H, h) | Photosystem II reaction center protein H | polymer | 65 | 7227.6 | 2 | UniProt (Q8DJ43) Pfam (PF00737) | Thermosynechococcus elongatus (strain BP-1) | PSII-H |
| 8 | BA, H (I, i) | Photosystem II reaction center protein I | polymer | 36 | 4196.0 | 2 | UniProt (Q8DJZ6) Pfam (PF02532) | Thermosynechococcus elongatus | PSII-I,PSII 4.4 kDa protein |
| 9 | CA, I (J, j) | Photosystem II reaction center protein J | polymer | 36 | 3627.3 | 2 | UniProt (P59087) Pfam (PF01788) | Thermosynechococcus elongatus (strain BP-1) | PSII-J |
| 10 | DA, J (K, k) | Photosystem II reaction center protein K | polymer | 37 | 4101.9 | 2 | UniProt (Q9F1K9) Pfam (PF02533) | Thermosynechococcus elongatus (strain BP-1) | PSII-K |
| 11 | EA, K (L, l) | Photosystem II reaction center protein L | polymer | 37 | 4299.0 | 2 | UniProt (Q8DIN8) Pfam (PF02419) | Thermosynechococcus elongatus (strain BP-1) | PSII-L |
| 12 | FA, L (M, m) | Photosystem II reaction center protein M | polymer | 33 | 3706.3 | 2 | UniProt (Q8DHA7) Pfam (PF05151) | Thermosynechococcus elongatus | PSII-M |
| 13 | GA, M (O, o) | Photosystem II manganese-stabilizing polypeptide | polymer | 244 | 26651.7 | 2 | UniProt (P0A431) Pfam (PF01716) | Thermosynechococcus elongatus (strain BP-1) | MSP |
| 14 | HA, N (T, t) | Photosystem II reaction center protein T | polymer | 30 | 3648.4 | 2 | UniProt (Q8DIQ0) Pfam (PF01405) | Thermosynechococcus elongatus | PSII-Tc |
| 15 | IA, O (U, u) | Photosystem II 12 kDa extrinsic protein | polymer | 97 | 10966.3 | 2 | UniProt (Q9F1L5) Pfam (PF06514) | Thermosynechococcus elongatus (strain BP-1) | PS II complex 12 kDa extrinsic protein,PSII-U |
| 16 | JA, P (V, v) | Cytochrome c-550 | polymer | 137 | 15148.3 | 2 | UniProt (P0A386) Pfam (PF14495) | Thermosynechococcus elongatus (strain BP-1) | Cytochrome c-549,Cytochrome c550,Low-potential cytochrome c |
| 17 | KA, Q (Y, y) | Photosystem II reaction center protein Ycf12 | polymer | 30 | 3228.0 | 2 | UniProt (Q8DJI1) Pfam (PF05969) | Thermosynechococcus elongatus (strain BP-1) | |
| 18 | LA, R (X, x) | Photosystem II reaction center X protein | polymer | 38 | 3990.8 | 2 | UniProt (Q9F1R6) Pfam (PF06596) | Thermosynechococcus elongatus (strain BP-1) | |
| 19 | MA, S (Z, z) | Photosystem II reaction center protein Z | polymer | 62 | 6766.2 | 2 | UniProt (Q8DHJ2) Pfam (PF01737) | Thermosynechococcus elongatus (strain BP-1) | PSII-Z |
| 20 | NA, T (R, r) | Photosystem II protein Y | polymer | 34 | 3859.7 | 2 | UniProt (Q8DKM3) Pfam (PF06298) | Thermosynechococcus elongatus (strain BP-1) | |
| 21 | EE, OA (a, A) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 22 | FE, GE, PA, QA (a, A) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) PubChem (312) | |||
| 23 | AF, AG, BD, BF, BG... (b, c, D, B, C...) | CHLOROPHYLL A | non-polymer | 893.5 | 70 | Chemie (CLA) | PSII-Z | ||
| 24 | AD, KE, RG, TA (D, a, d, A) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 25 | AE, DE, ED, GG, HG... (T, Z, D, c, k...) | BETA-CAROTENE | non-polymer | 536.9 | 22 | Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (86765360) PubChem (5315709) PubChem (5280489) PubChem (91827292) PubChem (92863345) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (124919640) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (6477957) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (146673260) PubChem (152743364) PubChem (124919639) PubChem (160505766) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 26 | FD, NE, WA, WG (D, a, A, d) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) PubChem (23304240) PubChem (20286) PubChem (21881166) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) | |||
| 27 | FH, OE, PD, PE, TE... (f, a, F, b, A...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (5459390) PubChem (102201395) PubChem (134765349) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 28 | GH, IG, JG, KG, QE... (h, c, a, H, C...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 10 | Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (448441) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 29 | AB, DH, HD, ID, JH... (A, e, D, l, E...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 10 | Chemie (LHG) PubChem (46936292) PubChem (446440) PubChem (73416066) PubChem (65144) PubChem (9547104) PubChem (13305396) PubChem (11846227) PubChem (138986743) | |||
| 30 | BB, SE (A, a) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 31 | CB, HE (A, a) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 32 | AC, BC, BE, CC, CH... (B, T, d, j, l...) | UNKNOWN LIGAND | non-polymer | 787.2 | 31 | Chemie (UNL) | |||
| 33 | AH, BH, DC, GD, JD... (d, C, D, c, m...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 13 | Chemie (LMG) | |||
| 34 | EH, OD (e, E) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 35 | CE, PH (V, v) | HEME C | non-polymer | 618.5 | 2 | Chemie (HEC) | |||
| 36 | AI, AJ, BI, BJ, CI... (J, v, L, y, M...) | water | water | 18.0 | 2012 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 40 |
| Total formula weight | 590607.7 | |
| Non-Polymers* | Number of molecules | 186 |
| Total formula weight | 142080.8 | |
| All* | Total formula weight | 732688.5 |
