6DDG
Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 50S ribosomal protein L19 | polymer | 116 | 13392.8 | 1 | UniProt (A0A077UVB6) Pfam (PF01245) UniProt (by SIFTS) (Q2FZ42) In PDB | Staphylococcus aureus | |
2 | B | 50S ribosomal protein L2 | polymer | 276 | 30088.0 | 1 | UniProt (B3VKN3) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60430) In PDB | Staphylococcus aureus | |
3 | C | 50S ribosomal protein L20 | polymer | 118 | 13720.3 | 1 | UniProt (A0A077VMP6) Pfam (PF00453) UniProt (by SIFTS) (Q2FXQ1) In PDB | Staphylococcus aureus | |
4 | D | 50S ribosomal protein L21 | polymer | 102 | 11354.1 | 1 | UniProt (D7URR3) Pfam (PF00829) UniProt (by SIFTS) (Q2FXS8) In PDB | Staphylococcus aureus | |
5 | E | 50S ribosomal protein L22 | polymer | 116 | 12786.8 | 1 | UniProt (A0A077UKF9) Pfam (PF00237) UniProt (by SIFTS) (Q2FW11) In PDB | Staphylococcus aureus | |
6 | F | 50S ribosomal protein L23 | polymer | 91 | 10625.4 | 1 | UniProt (W8TUB4) Pfam (PF00276) UniProt (by SIFTS) (Q2FW08) In PDB | Staphylococcus aureus | |
7 | G | 50S ribosomal protein L24 | polymer | 105 | 11561.5 | 1 | UniProt (W8TRD5) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q2FW17) In PDB | Staphylococcus aureus | |
8 | H | 50S ribosomal protein L25 | polymer | 217 | 23810.6 | 1 | UniProt (A0A133Q8Z9) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q2FJE0) In PDB | Staphylococcus aureus | General stress protein CTC |
9 | I | 50S ribosomal protein L27 | polymer | 85 | 9198.4 | 1 | UniProt (A0A077ULC5) Pfam (PF01016) UniProt (by SIFTS) (Q2FXT0) In PDB | Staphylococcus aureus | |
10 | J | 50S ribosomal protein L28 | polymer | 62 | 6995.3 | 1 | UniProt (A0A077URJ8) Pfam (PF00830) UniProt (by SIFTS) (Q2FZ60) In PDB | Staphylococcus aureus | |
11 | K | 50S ribosomal protein L29 | polymer | 69 | 8105.3 | 1 | UniProt (A0A077W1J5) Pfam (PF00831) UniProt (by SIFTS) (Q2FW14) In PDB | Staphylococcus aureus | |
12 | L | 50S ribosomal protein L3 | polymer | 217 | 23459.9 | 1 | UniProt (W8U3W0) Pfam (PF00297) UniProt (by SIFTS) (Q2FW06) In PDB | Staphylococcus aureus | |
13 | M | 50S ribosomal protein L30 | polymer | 59 | 6565.7 | 1 | UniProt (W8UVN7) Pfam (PF00327) UniProt (by SIFTS) (P0A0G2) In PDB | Staphylococcus aureus | |
14 | N | 50S ribosomal protein L32 | polymer | 57 | 6500.6 | 1 | UniProt (A0A077UWR7) Pfam (PF01783) UniProt (by SIFTS) (Q2FZF1) In PDB | Staphylococcus aureus | |
15 | O | 50S ribosomal protein L33 | polymer | 49 | 5885.8 | 1 | UniProt (A0A077UXT4) Pfam (PF00471) UniProt (by SIFTS) (Q2FY22) In PDB | Staphylococcus aureus | |
16 | P | 50S ribosomal protein L34 | polymer | 45 | 5454.6 | 1 | UniProt (Q2YZB6) Pfam (PF00468) UniProt (by SIFTS) (Q2FUQ0) In PDB | Staphylococcus aureus | |
17 | Q | 50S ribosomal protein L35 | polymer | 65 | 7593.2 | 1 | UniProt (A0A077UL47) Pfam (PF01632) UniProt (by SIFTS) (Q2FXQ0) In PDB | Staphylococcus aureus | |
18 | R | 50S ribosomal protein L36 | polymer | 37 | 4318.4 | 1 | UniProt (A0A077UGV8) Pfam (PF00444) UniProt (by SIFTS) (Q2FW29) In PDB | Staphylococcus aureus | |
19 | S | 50S ribosomal protein L4 | polymer | 207 | 22523.8 | 1 | UniProt (A0A166DK89) Pfam (PF00573) UniProt (by SIFTS) (Q2FW07) In PDB | Staphylococcus aureus | |
20 | V | 50S ribosomal protein L13 | polymer | 145 | 16359.4 | 1 | UniProt (W8TUE6) Pfam (PF00572) UniProt (by SIFTS) (Q2FW38) In PDB | Staphylococcus aureus | |
21 | W | 50S ribosomal protein L14 | polymer | 122 | 13157.3 | 1 | UniProt (A0A077UUA0) Pfam (PF00238) UniProt (by SIFTS) (Q2FW16) In PDB | Staphylococcus aureus | |
22 | X | 50S ribosomal protein L15 | polymer | 146 | 15628.9 | 1 | UniProt (A0A077UGA7) Pfam (PF00828) UniProt (by SIFTS) (P0A0F8) In PDB | Staphylococcus aureus | |
23 | Y | 50S ribosomal protein L16 | polymer | 144 | 16274.0 | 1 | UniProt (A0A077V4G0) Pfam (PF00252) UniProt (by SIFTS) (Q2FW13) In PDB | Staphylococcus aureus | |
24 | Z | 50S ribosomal protein L17 | polymer | 122 | 13771.8 | 1 | UniProt (A0A077UG91) Pfam (PF01196) UniProt (by SIFTS) (Q2FW33) In PDB | Staphylococcus aureus | |
25 | a | 50S ribosomal protein L18 | polymer | 119 | 13124.1 | 1 | UniProt (W8TRE0) Pfam (PF00861) UniProt (by SIFTS) (Q2FW22) In PDB | Staphylococcus aureus | |
26 | 1 | 23S rRNA | polymer | 2923 | 946696.6 | 1 | GenBank (1269117575) | Staphylococcus aureus | |
27 | 2 | 5S rRNA | polymer | 115 | 36974.9 | 1 | GenBank (1333434557) | Staphylococcus aureus | |
28 | 1 | 2-chloro-N-({(5S)-3-[3-fluoro-4-(morpholin-4-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl}methyl)acetamide | non-polymer | 371.8 | 1 | Chemie (G6M) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 27 |
Total formula weight | 1305927.6 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 371.8 | |
All* | Total formula weight | 1306299.3 |