6CXF

Structure of alpha-GSA[26,P5p] bound by CD1d and in complex with the Va14Vb8.2 TCR

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (A)	Antigen-presenting glycoprotein CD1d1	polymer	285	32632.7	1	UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609)	Mus musculus (Mouse)	MCG3074,isoform CRA_a
2	B (B)	Beta-2-microglobulin	polymer	98	11529.2	1	UniProt (P01887) Pfam (PF07654)	Mus musculus (Mouse)
3	C (C)	Chimeric T cell antigen receptor alpha chain Va14,Va24,Ja18	polymer	209	23055.6	1		Mus musculus (Mouse)
4	D (D)	Chimeric T cell antigen receptor beta chain Vb8.2, vb11	polymer	241	27027.0	1		Mus musculus (Mouse)
5	E (E)	alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	branched		894.8	1	In PDB GlyTouCan (G42466VF)
6	F, G (A)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	2	Chemie (NAG)
7	H (A)	N-[(2S,3S,4R)-3,4-dihydroxy-8-oxo-8-[(4-pentylphenyl)amino]-1-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetr ahydro-2H-pyran-2-yl]oxy}octan-2-yl]hexacosanamide	non-polymer		893.3	1	Chemie (ELS)
8	I, J, K, L, M... (A, C, D)	SODIUM ION	non-polymer		23.0	6	Chemie (NA)
9	O, P, Q, R (A, B, C, D)	water	water		18.0	215	Chemie (HOH)

Sequence modifications

A: 1 - 279 (UniProt: A0A0R4J090)

PDB	External Database	Details
His 280	-	expression tag
His 281	-	expression tag
His 282	-	expression tag
His 283	-	expression tag
His 284	-	expression tag
His 285	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	94244.4
Branched	Number of molecules	1
	Total formula weight	894.8
Non-Polymers*	Number of molecules	9
	Total formula weight	1473.6
All*	Total formula weight	96612.9

*Water molecules are not included.