6CXF
Structure of alpha-GSA[26,P5p] bound by CD1d and in complex with the Va14Vb8.2 TCR
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Antigen-presenting glycoprotein CD1d1 | polymer | 285 | 32632.7 | 1 | UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609) In PDB | Mus musculus (Mouse) | MCG3074,isoform CRA_a |
2 | B | Beta-2-microglobulin | polymer | 98 | 11529.2 | 1 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
3 | C | Chimeric T cell antigen receptor alpha chain Va14,Va24,Ja18 | polymer | 209 | 23055.6 | 1 | Mus musculus (Mouse) | ||
4 | D | Chimeric T cell antigen receptor beta chain Vb8.2, vb11 | polymer | 241 | 27027.0 | 1 | Mus musculus (Mouse) | ||
5 | E | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G42466VF) | |||
6 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
7 | A | N-[(2S,3S,4R)-3,4-dihydroxy-8-oxo-8-[(4-pentylphenyl)amino]-1-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetr ahydro-2H-pyran-2-yl]oxy}octan-2-yl]hexacosanamide | non-polymer | 893.3 | 1 | Chemie (ELS) | |||
8 | A, C, D | SODIUM ION | non-polymer | 23.0 | 6 | Chemie (NA) | |||
9 | water | water | 18.0 | 215 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: A0A0R4J090)
PDB | External Database | Details |
---|---|---|
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 94244.4 | |
Branched | Number of molecules | 1 |
Total formula weight | 894.8 | |
Non-Polymers* | Number of molecules | 9 |
Total formula weight | 1473.6 | |
All* | Total formula weight | 96612.9 |