6CXE
Structure of alpha-GSA[26,6P] bound by CD1d and in complex with the Va14Vb8.2 TCR
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | C | Chimeric T cell antigen receptor alpha chain Va14,Va24,Ja18 | polymer | 209 | 23055.6 | 1 | Mus musculus (Mouse) | ||
2 | D | Chimeric T cell antigen receptor beta chain Vb8.2, vb11 | polymer | 241 | 27027.0 | 1 | Mus musculus (Mouse) | ||
3 | A | Antigen-presenting glycoprotein CD1d1 | polymer | 285 | 32632.7 | 1 | UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609) In PDB | Mus musculus (Mouse) | MCG3074,isoform CRA_a |
4 | B | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
5 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
6 | C, D, A | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) | |||
7 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
8 | A | N-[(2S,3S,4R)-3,4-dihydroxy-8-oxo-8-[(6-phenylhexyl)amino]-1-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octan-2-yl]hexacosanamide | non-polymer | 907.3 | 1 | Chemie (EM4) | |||
9 | water | water | 18.0 | 279 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: A0A0R4J090)
PDB | External Database | Details |
---|---|---|
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 94375.6 | |
Branched | Number of molecules | 1 |
Total formula weight | 570.5 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 1441.7 | |
All* | Total formula weight | 96387.9 |