6CX5
Structure of alpha-GSA[8,8P] bound by CD1d and in complex with the Va14Vb8.2 TCR
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Antigen-presenting glycoprotein CD1d1 | polymer | 285 | 32632.7 | 1 | UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609) In PDB | Mus musculus (Mouse) | MCG3074,isoform CRA_a |
2 | B | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
3 | C | Chimeric T cell antigen receptor alpha chain Va14,Va24,Ja18 | polymer | 209 | 23055.6 | 1 | Mus musculus (Mouse) | ||
4 | D | Chimeric T cell antigen receptor beta chain Vb8.2, vb11 | polymer | 241 | 27027.0 | 1 | Mus musculus (Mouse) | ||
5 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
6 | F | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
7 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
8 | A | PALMITIC ACID | non-polymer | 256.4 | 1 | Chemie (PLM) | |||
9 | A | (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(8-phenyloctyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide (non-preferred name) | non-polymer | 682.9 | 1 | Chemie (FJM) | |||
10 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
11 | water | water | 18.0 | 138 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: A0A0R4J090)
PDB | External Database | Details |
---|---|---|
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 94375.6 | |
Branched | Number of molecules | 2 |
Total formula weight | 994.9 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 1183.5 | |
All* | Total formula weight | 96554.1 |