6CW9
Structure of alpha-GC[8,16P] bound by CD1d and in complex with the Va14Vb8.2 TCR
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C) | Chimeric T cell antigen receptor alpha chain. Va14,Va24,Ja18 | polymer | 203 | 22394.9 | 1 | Mus musculus (Mouse) | ||
| 2 | B (D) | Chimeric T cell antigen receptor beta chain Vb8.2, vb11 | polymer | 239 | 26766.7 | 1 | Mus musculus (Mouse) | ||
| 3 | C (A) | Antigen-presenting glycoprotein CD1d1 | polymer | 274 | 31260.3 | 1 | UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609) | Mus musculus (Mouse) | MCG3074,isoform CRA_a |
| 4 | D (B) | Beta-2-microglobulin | polymer | 97 | 11416.0 | 1 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 5 | E (E) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 6 | F (F) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
| 7 | G (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 8 | H (A) | PALMITIC ACID | non-polymer | 256.4 | 1 | Chemie (PLM) | |||
| 9 | I (A) | N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxy-16-phenylhexadecan-2-yl]octanamide | non-polymer | 653.9 | 1 | Chemie (7LM) | |||
| 10 | J, K, L, M (C, D, A, B) | water | water | 18.0 | 441 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 91837.8 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 994.9 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 1131.5 | |
| All* | Total formula weight | 93964.3 |
