6CMO
Rhodopsin-Gi complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | R | chimera protein of Soluble cytochrome b562 and Rhodopsin | polymer | 463 | 52385.4 | 1 | UniProt (P0ABE7) UniProt (P08100) Pfam (PF07361) Pfam (PF10413) Pfam (PF00001) In PDB | Escherichia coli | Cytochrome b-562,Opsin-2 |
2 | A | Guanine nucleotide-binding protein G(i) subunit alpha-1 | polymer | 354 | 40445.1 | 1 | UniProt (P63096) Pfam (PF00503) In PDB | Homo sapiens (Human) | Adenylate cyclase-inhibiting G alpha protein |
3 | B | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | polymer | 345 | 37915.5 | 1 | UniProt (P54311) Pfam (PF00400) In PDB | Rattus norvegicus (Rat) | Transducin beta chain 1 |
4 | G | Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | polymer | 68 | 7563.8 | 1 | UniProt (P63212) Pfam (PF00631) In PDB | Bos taurus (Bovine) | G gamma-I |
5 | L | Fab light chain | polymer | 215 | 23258.8 | 1 | synthetic construct | ||
6 | H | Fab Heavy chain | polymer | 239 | 25788.8 | 1 | synthetic construct | ||
7 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) |
Sequence modifications
R: -105 - -1 (UniProt: P0ABE7)
R: 3 - 323 (UniProt: P08100)
A: 1 - 354 (UniProt: P63096)
B: 2 - 340 (UniProt: P54311)
PDB | External Database | Details |
---|---|---|
Phe -139 | - | expression tag |
Ala -138 | - | expression tag |
Asp -137 | - | expression tag |
Tyr -136 | - | expression tag |
Lys -135 | - | expression tag |
Asp -134 | - | expression tag |
Asp -133 | - | expression tag |
Asp -132 | - | expression tag |
Asp -131 | - | expression tag |
Ala -130 | - | expression tag |
Lys -129 | - | expression tag |
Leu -128 | - | expression tag |
Gln -127 | - | expression tag |
Thr -126 | - | expression tag |
Met -125 | - | expression tag |
His -124 | - | expression tag |
His -123 | - | expression tag |
His -122 | - | expression tag |
His -121 | - | expression tag |
His -120 | - | expression tag |
His -119 | - | expression tag |
His -118 | - | expression tag |
His -117 | - | expression tag |
His -116 | - | expression tag |
His -115 | - | expression tag |
Glu -114 | - | expression tag |
Asn -113 | - | expression tag |
Leu -112 | - | expression tag |
Tyr -111 | - | expression tag |
Phe -110 | - | expression tag |
Gln -109 | - | expression tag |
Gly -108 | - | expression tag |
Gly -107 | - | expression tag |
Thr -106 | - | expression tag |
Trp -99 | Met 29 | conflict |
Ile -4 | His 124 | conflict |
Leu 0 | - | linker |
Met 1 | - | linker |
Cys 2 | - | linker |
PDB | External Database | Details |
---|---|---|
Gln 113 | Glu 113 | conflict |
Tyr 257 | Met 257 | conflict |
Cys 282 | Asn 282 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 203 | Gly 203 | conflict |
Ser 326 | Ala 326 | conflict |
PDB | External Database | Details |
---|---|---|
Met -4 | - | initiating methionine |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
Leu -1 | - | expression tag |
Leu 0 | - | expression tag |
Gln 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 187357.3 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
All* | Total formula weight | 187781.7 |