6CFG
Crystal structure of the A/Vietnam/1203/2004 (H5N1) influenza virus hemagglutinin in complex with small molecule JNJ4796
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Hemagglutinin | polymer | 334 | 37948.0 | 1 | UniProt (Q5EP31) Pfam (PF00509) In PDB | Influenza A virus (A/Viet Nam/1203/2004(H5N1)) | |
2 | B | Hemagglutinin | polymer | 177 | 20414.5 | 1 | UniProt (Q6DQ18) Pfam (PF00509) UniProt (by SIFTS) (A8UDR1) In PDB | Influenza A virus (A/Viet Nam/1203/2004(H5N1)) | |
3 | C, D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
5 | B | N-[2-(2-{4-[(R)-(2-methyl-2H-tetrazol-5-yl)(phenyl)methyl]piperazine-1-carbonyl}pyridin-4-yl)-1,3-benzoxazol-5-yl]acetamide | non-polymer | 537.6 | 1 | Chemie (EZ7) | |||
6 | B | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
7 | water | water | 18.0 | 93 | Chemie (HOH) |
Sequence modifications
A: 11 - 333 (UniProt: Q5EP31)
B: 1 - 174 (UniProt: Q6DQ18)
PDB | External Database | Details |
---|---|---|
Ala 7 | - | expression tag |
Asp 8 | - | expression tag |
Pro 9 | - | expression tag |
Gly 10 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ser 175 | - | expression tag |
Gly 176 | - | expression tag |
Arg 177 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 58362.5 | |
Branched | Number of molecules | 2 |
Total formula weight | 848.8 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 1086.1 | |
All* | Total formula weight | 60297.4 |