6C6F

Structure of glycolipid aGSA[26,P5p] in complex with mouse CD1d

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (A)	Antigen-presenting glycoprotein CD1d1	polymer	285	32632.7	1	UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609)	Mus musculus (Mouse)	MCG3074,isoform CRA_a
2	B (B)	Beta-2-microglobulin	polymer	99	11660.4	1	UniProt (P01887) Pfam (PF07654)	Mus musculus (Mouse)
3	C (C)	alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	branched		1057.0	1	In PDB GlyTouCan (G82348BZ)
4	D, E (A)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	2	Chemie (NAG)
5	F (A)	N-[(2S,3S,4R)-3,4-dihydroxy-8-oxo-8-[(4-pentylphenyl)amino]-1-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetr ahydro-2H-pyran-2-yl]oxy}octan-2-yl]hexacosanamide	non-polymer		893.3	1	Chemie (ELS)
6	G, H (A)	SODIUM ION	non-polymer		23.0	2	Chemie (NA)
7	I, J (A, B)	water	water		18.0	255	Chemie (HOH)

Sequence modifications

A: 1 - 279 (UniProt: A0A0R4J090)

PDB	External Database	Details
His 280	-	expression tag
His 281	-	expression tag
His 282	-	expression tag
His 283	-	expression tag
His 284	-	expression tag
His 285	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	44293.0
Branched	Number of molecules	1
	Total formula weight	1057.0
Non-Polymers*	Number of molecules	5
	Total formula weight	1381.7
All*	Total formula weight	46731.7

*Water molecules are not included.