6C4I

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	23S rRNA	polymer	2904	941832.6	1	GenBank (687670942)	Escherichia coli
2	B	5S rRNA	polymer	120	38790.1	1	GenBank (1273279017)	Escherichia coli
3	C	50S ribosomal protein L2	polymer	273	29923.6	1	UniProt (B7MCT2) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60422) In PDB	Escherichia coli
4	D	50S ribosomal protein L3	polymer	209	22277.5	1	UniProt (P60438) Pfam (PF00297) In PDB	Escherichia coli
5	E	50S ribosomal protein L4	polymer	201	22121.6	1	UniProt (P60723) Pfam (PF00573) In PDB	Escherichia coli
6	F	50S ribosomal protein L5	polymer	177	20073.2	1	UniProt (P62399) Pfam (PF00281) Pfam (PF00673) In PDB	Escherichia coli
7	G	50S ribosomal protein L6	polymer	177	18932.8	1	UniProt (P0AG55) Pfam (PF00347) In PDB	Escherichia coli
8	H	50S ribosomal protein L9	polymer	149	15789.0	1	UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB	Escherichia coli
9	I	50S ribosomal protein L10	polymer	165	17736.6	1	UniProt (P0A7J3) Pfam (PF00466) In PDB	Escherichia coli
10	J	50S ribosomal protein L11	polymer	142	14894.4	1	UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) In PDB	Escherichia coli
11	K	50S ribosomal protein L13	polymer	142	16050.6	1	UniProt (P0AA10) Pfam (PF00572) In PDB	Escherichia coli
12	L	50S ribosomal protein L14	polymer	123	13565.1	1	UniProt (P0ADY3) Pfam (PF00238) In PDB	Escherichia coli
13	M	50S ribosomal protein L15	polymer	144	15008.5	1	UniProt (P02413) Pfam (PF00828) In PDB	Escherichia coli
14	N	50S ribosomal protein L16	polymer	136	15312.3	1	UniProt (P0ADY7) Pfam (PF00252) In PDB	Escherichia coli
15	O	50S ribosomal protein L17	polymer	127	14393.7	1	UniProt (P0AG44) Pfam (PF01196) In PDB	Escherichia coli
16	P	50S ribosomal protein L18	polymer	117	12794.7	1	UniProt (P0C018) Pfam (PF00861) In PDB	Escherichia coli
17	Q	50S ribosomal protein L19	polymer	115	13159.3	1	UniProt (P0A7K6) Pfam (PF01245) In PDB	Escherichia coli
18	R	50S ribosomal protein L20	polymer	118	13528.0	1	UniProt (P0A7L3) Pfam (PF00453) In PDB	Escherichia coli
19	S	50S ribosomal protein L21	polymer	103	11586.4	1	UniProt (P0AG48) Pfam (PF00829) In PDB	Escherichia coli
20	T	50S ribosomal protein L22	polymer	110	12253.4	1	UniProt (P61175) Pfam (PF00237) In PDB	Escherichia coli
21	U	50S ribosomal protein L23	polymer	100	11222.2	1	UniProt (P0ADZ0) Pfam (PF00276) In PDB	Escherichia coli
22	V	50S ribosomal protein L24	polymer	104	11339.3	1	UniProt (P60624) Pfam (PF00467) Pfam (PF17136) In PDB	Escherichia coli
23	W	50S ribosomal protein L25	polymer	94	10713.5	1	UniProt (P68919) Pfam (PF01386) In PDB	Escherichia coli
24	X	50S ribosomal protein L27	polymer	85	9146.5	1	UniProt (P0A7L8) Pfam (PF01016) In PDB	Escherichia coli
25	Y	50S ribosomal protein L28	polymer	78	9027.6	1	UniProt (P0A7M2) Pfam (PF00830) In PDB	Escherichia coli
26	Z	50S ribosomal protein L29	polymer	63	7286.5	1	UniProt (B7M1M6) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6) In PDB	Escherichia coli
27	0	50S ribosomal protein L30	polymer	59	6554.8	1	UniProt (P0AG51) Pfam (PF00327) In PDB	Escherichia coli
28	1	50S ribosomal protein L31	polymer	70	7887.1	1	UniProt (P0A7M9) Pfam (PF01197) In PDB	Escherichia coli
29	2	50S ribosomal protein L32	polymer	57	6463.4	1	UniProt (P0A7N4) Pfam (PF01783) In PDB	Escherichia coli
30	3	50S ribosomal protein L33	polymer	52	6057.2	1	UniProt (P0A7N9) Pfam (PF00471) In PDB	Escherichia coli
31	4	50S ribosomal protein L34	polymer	46	5397.5	1	UniProt (P0A7P5) Pfam (PF00468) In PDB	Escherichia coli
32	5	50S ribosomal protein L35	polymer	65	7313.0	1	UniProt (P0A7Q1) Pfam (PF01632) In PDB	Escherichia coli
33	6	50S ribosomal protein L36	polymer	38	4377.4	1	UniProt (P0A7Q6) Pfam (PF00444) In PDB	Escherichia coli
34	a	16S rRNA	polymer	1534	497405.0	1	GenBank (1162858853)	Escherichia coli
35	b	30S ribosomal protein S2	polymer	241	26781.7	1	UniProt (P0A7V0) Pfam (PF00318) In PDB	Escherichia coli
36	c	30S ribosomal protein S3	polymer	233	26031.3	1	UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) In PDB	Escherichia coli
37	d	30S ribosomal protein S4	polymer	206	23514.2	1	UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB	Escherichia coli
38	e	30S ribosomal protein S5	polymer	167	17629.4	1	UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB	Escherichia coli
39	f	30S ribosomal protein S6	polymer	135	15727.5	1	UniProt (P02358) Pfam (PF01250) In PDB	Escherichia coli
40	g	30S ribosomal protein S7	polymer	179	20055.2	1	UniProt (P02359) Pfam (PF00177) In PDB	Escherichia coli
41	h	30S ribosomal protein S8	polymer	130	14146.6	1	UniProt (P0A7W7) Pfam (PF00410) In PDB	Escherichia coli
42	i	30S ribosomal protein S9	polymer	130	14886.3	1	UniProt (P0A7X3) Pfam (PF00380) In PDB	Escherichia coli
43	j	30S ribosomal protein S10	polymer	103	11755.6	1	UniProt (P0A7R5) Pfam (PF00338) In PDB	Escherichia coli
44	k	30S ribosomal protein S11	polymer	129	13871.0	1	UniProt (P0A7R9) Pfam (PF00411) In PDB	Escherichia coli
45	l	30S ribosomal protein S12	polymer	124	13814.2	1	UniProt (P0A7S3) Pfam (PF00164) In PDB	Escherichia coli
46	m	30S ribosomal protein S13	polymer	118	13128.5	1	UniProt (P0A7S9) Pfam (PF00416) In PDB	Escherichia coli
47	n	30S ribosomal protein S14	polymer	101	11606.6	1	UniProt (P0AG59) Pfam (PF00253) In PDB	Escherichia coli
48	o	30S ribosomal protein S15	polymer	89	10290.8	1	UniProt (P0ADZ4) Pfam (PF00312) In PDB	Escherichia coli
49	p	30S ribosomal protein S16	polymer	82	9207.6	1	UniProt (P0A7T3) Pfam (PF00886) In PDB	Escherichia coli
50	q	30S ribosomal protein S17	polymer	84	9724.5	1	UniProt (P0AG63) Pfam (PF00366) In PDB	Escherichia coli
51	r	30S ribosomal protein S18	polymer	66	7734.9	1	UniProt (P0A7T7) Pfam (PF01084) In PDB	Escherichia coli
52	s	30S ribosomal protein S19	polymer	92	10455.4	1	UniProt (B7MCT1) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) In PDB	Escherichia coli
53	t	30S ribosomal protein S20	polymer	87	9708.5	1	UniProt (P0A7U7) Pfam (PF01649) In PDB	Escherichia coli
54	u	30S ribosomal protein S21	polymer	71	8524.0	1	UniProt (P68679) Pfam (PF01165) In PDB	Escherichia coli
55	v	Peptide chain release factor 2	polymer	384	43384.9	1	UniProt (P07012) Pfam (PF03462) Pfam (PF00472) In PDB	Escherichia coli
56	w	Alternative ribosome-rescue factor A	polymer	57	6513.4	1	UniProt (P36675) Pfam (PF03889) In PDB	Escherichia coli
57	x, y	E-site or P-site tRNA fMet	polymer	77	24802.8	2	GenBank (1315725308)	Escherichia coli
58	z	mRNA	polymer	18	5922.6	1		Escherichia coli
59	A, a, B, C, d...	MAGNESIUM ION	non-polymer		24.3	317	Chemie (MG)
60	1, 6	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
61		water	water		18.0	2	Chemie (HOH)

Sequence modifications

A: 1 - 2904 (GenBank: 687670942)

PDB	External Database	Details
A 887	U 2680679	conflict

v: 1 - 365 (UniProt: P07012)

PDB	External Database	Details
Ala -18	-	expression tag
His -17	-	expression tag
His -16	-	expression tag
His -15	-	expression tag
His -14	-	expression tag
His -13	-	expression tag
His -12	-	expression tag
Ser -11	-	expression tag
Ala -10	-	expression tag
Ala -9	-	expression tag
Leu -8	-	expression tag
Glu -7	-	expression tag
Val -6	-	expression tag
Leu -5	-	expression tag
Phe -4	-	expression tag
Gln -3	-	expression tag
Gly -2	-	expression tag
Pro -1	-	expression tag
Gly 0	-	expression tag

w: 1 - 55 (UniProt: P36675)

PDB	External Database	Details
Gly -1	-	expression tag
Ser 0	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	59
	Total formula weight	2274234.2
Non-Polymers*	Number of molecules	319
	Total formula weight	7835.5
All*	Total formula weight	2282069.7

*Water molecules are not included.