6BXC
Crystal structure of N-terminal fragment of Zebrafish Toll-Like Receptor 5 (TLR5) with Lamprey Variable Lymphocyte Receptor 9 (VLR9) bound
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Toll-like receptor 5b, Variable lymphocyte receptor B chimera | polymer | 455 | 51169.2 | 2 | UniProt (F8W3J5) UniProt (Q4G1L2) Pfam (PF13855) Pfam (PF11921) In PDB | Danio rerio (Zebrafish) | |
2 | D, C | Variable Lymphocyte Receptor 9 (VLR9) | polymer | 178 | 19287.6 | 2 | Petromyzon marinus (sea lamprey) | ||
3 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
4 | A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
5 | D | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
6 | water | water | 18.0 | 121 | Chemie (HOH) |
Sequence modifications
A, B: 22 - 390 (UniProt: F8W3J5)
A, B: 391 - 465 (UniProt: Q4G1L2)
PDB | External Database | Details |
---|---|---|
Ala 18 | - | expression tag |
Asp 19 | - | expression tag |
Pro 20 | - | expression tag |
Gly 21 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ser 466 | - | expression tag |
Ala 467 | - | expression tag |
Ser 468 | - | expression tag |
Leu 469 | - | expression tag |
Val 470 | - | expression tag |
Pro 471 | - | expression tag |
Arg 472 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 140913.7 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 725.7 | |
All* | Total formula weight | 142063.8 |