6BEE
Crystal structure of VACV D13 in complex with Rifaximin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Scaffold protein D13 | polymer | 553 | 62076.7 | 3 | UniProt (P68440) Pfam (PF03340) | Vaccinia virus WR (VACV) | 62 kDa protein,Rifampicin resistance protein |
| 2 | D, H, J, K, L (A, B, C) | FORMIC ACID | non-polymer | 46.0 | 5 | Chemie (FMT) PubChem (284) | |||
| 3 | E, F, I, M (A, B, C) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
| 4 | G (B) | (2S,16Z,18E,20S,21S,22R,23R,24R,25S,26R,27S,28E)-5,6,21,23-tetrahydroxy-27-methoxy-2,4,11,16,20,22,24,26-octamethyl-1,1 5-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)furo[2'',3'':7',8']naphtho[1',2':4,5]imidazo[1,2-a]pyridin-2 5-yl acetate | non-polymer | 785.9 | 1 | Chemie (RXM) PubChem (16667733) PubChem (16758120) PubChem (17753759) PubChem (176519858) PubChem (23307804) PubChem (44199796) PubChem (23351316) PubChem (24870679) PubChem (42608884) PubChem (46783403) PubChem (44384716) PubChem (51012105) PubChem (49868155) PubChem (57626904) PubChem (53395233) PubChem (57292867) PubChem (66577007) PubChem (57507834) PubChem (66509026) PubChem (66604456) PubChem (73896895) PubChem (73950159) PubChem (6436173) PubChem (72111) PubChem (71296876) PubChem (71775666) PubChem (91411011) PubChem (72698618) PubChem (73265405) PubChem (73921395) PubChem (90660330) PubChem (101307877) PubChem (117783809) PubChem (118718111) PubChem (122172959) PubChem (122414324) PubChem (6710764) PubChem (124746831) PubChem (124746829) PubChem (124868614) PubChem (9810936) PubChem (125462809) PubChem (125319691) PubChem (129009939) PubChem (131632292) PubChem (117849361) PubChem (132342651) PubChem (134754219) PubChem (118725303) PubChem (134754217) PubChem (135391139) PubChem (122361733) PubChem (123805835) PubChem (124746830) PubChem (125319689) PubChem (125319690) PubChem (125319692) PubChem (125459307) PubChem (129009958) PubChem (129010377) PubChem (129606859) PubChem (140589247) PubChem (131859901) PubChem (146065709) PubChem (153448886) PubChem (134754218) PubChem (155982350) PubChem (170922981) PubChem (172878406) PubChem (173000520) PubChem (168322437) PubChem (171145532) PubChem (171148346) PubChem (171699666) PubChem (173939212) | |||
| 5 | N, O, P (A, B, C) | water | water | 18.0 | 278 | Chemie (HOH) |
Sequence modifications
A, B, C: 1 - 551 (UniProt: P68440)
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 186230.0 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 1264.3 | |
| All* | Total formula weight | 187494.2 |
