6B7O
Crystal structure of Legionella effector sdeD (lpg2509) H67A in complex with ADP-ribosylated Ubiquitin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | SdeD (lpg2509) H67A | polymer | 383 | 43371.9 | 1 | UniProt (Q5ZSK8) Pfam (PF12252) | Legionella pneumophila | |
| 2 | B, C (B, C) | Polyubiquitin-C | polymer | 76 | 8576.8 | 2 | UniProt (P0CG48) Pfam (PF00240) | Homo sapiens (Human) | |
| 3 | D (B) | [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE | non-polymer | 559.3 | 1 | Chemie (AR6) PubChem (192) PubChem (25113622) PubChem (25113623) PubChem (44415180) PubChem (51051599) PubChem (44144391) PubChem (445794) PubChem (447048) PubChem (89379870) PubChem (33576) PubChem (447165) PubChem (448826) PubChem (91746164) PubChem (9548001) PubChem (9547960) PubChem (122606931) PubChem (122609061) PubChem (10437766) PubChem (174159053) PubChem (140853820) PubChem (146879505) PubChem (162774256) PubChem (162782217) PubChem (163972867) PubChem (173750345) PubChem (173750346) PubChem (175675949) | |||
| 4 | E, F, G (A, B, C) | water | water | 18.0 | 211 | Chemie (HOH) |
Sequence modifications
A: 2 - 382 (UniProt: Q5ZSK8)
| PDB | External Database | Details |
|---|---|---|
| Ser 0 | - | expression tag |
| Met 1 | - | expression tag |
| Ala 67 | His 82 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 60525.6 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 559.3 | |
| All* | Total formula weight | 61084.9 |
