6B7N
Cryo-electron microscopy structure of porcine delta coronavirus spike protein in the pre-fusion state
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike protein | polymer | 1107 | 122277.3 | 3 | UniProt (A0A075E3D7) Pfam (PF01600) Pfam (PF19209) Pfam (PF01601) | Deltacoronavirus PDCoV/USA/Ohio137/2014 | |
| 2 | D, E, F, H, I... (D, E, F, H, I...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 3 | G, L, Q (G, L, Q) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 627.6 | 3 | In PDB BIRD (PRD_900017) GlyTouCan (G47362BJ) | triacetyl-beta-chitotriose | ||
| 4 | AA, BA, CA, DA, EA... (B, C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 24 | Chemie (NAG) |
Sequence modifications
A, B, C: 18 - 1017 (UniProt: A0A075E3D7)
| PDB | External Database | Details |
|---|---|---|
| Ile 111 | Val 111 | conflict |
| Ile 553 | Thr 553 | conflict |
| Thr 583 | Ala 583 | conflict |
| Lys 642 | Gln 642 | conflict |
| Asp 1018 | - | expression tag |
| Val 1019 | - | expression tag |
| Asn 1020 | - | expression tag |
| Gln 1021 | - | expression tag |
| Thr 1022 | - | expression tag |
| Val 1023 | - | expression tag |
| Ser 1024 | - | expression tag |
| Asp 1025 | - | expression tag |
| Ile 1026 | - | expression tag |
| Ile 1027 | - | expression tag |
| Asp 1028 | - | expression tag |
| Asn 1029 | - | expression tag |
| Leu 1030 | - | expression tag |
| Pro 1031 | - | expression tag |
| Thr 1032 | - | expression tag |
| Ala 1033 | - | expression tag |
| Thr 1034 | - | expression tag |
| Pro 1035 | - | expression tag |
| Pro 1036 | - | expression tag |
| Gln 1037 | - | expression tag |
| Trp 1038 | - | expression tag |
| Asp 1039 | - | expression tag |
| Val 1040 | - | expression tag |
| Gly 1041 | - | expression tag |
| Ile 1042 | - | expression tag |
| Tyr 1043 | - | expression tag |
| Asn 1044 | - | expression tag |
| Asn 1045 | - | expression tag |
| Thr 1046 | - | expression tag |
| Ile 1047 | - | expression tag |
| Leu 1048 | - | expression tag |
| Asn 1049 | - | expression tag |
| Leu 1050 | - | expression tag |
| Thr 1051 | - | expression tag |
| Val 1052 | - | expression tag |
| Glu 1053 | - | expression tag |
| Ile 1054 | - | expression tag |
| Asn 1055 | - | expression tag |
| Asp 1056 | - | expression tag |
| Leu 1057 | - | expression tag |
| Gln 1058 | - | expression tag |
| Glu 1059 | - | expression tag |
| Arg 1060 | - | expression tag |
| Ser 1061 | - | expression tag |
| Lys 1062 | - | expression tag |
| Asn 1063 | - | expression tag |
| Leu 1064 | - | expression tag |
| Ser 1065 | - | expression tag |
| Gln 1066 | - | expression tag |
| Ile 1067 | - | expression tag |
| Ala 1068 | - | expression tag |
| Asp 1069 | - | expression tag |
| Arg 1070 | - | expression tag |
| Leu 1071 | - | expression tag |
| Gln 1072 | - | expression tag |
| Asn 1073 | - | expression tag |
| Tyr 1074 | - | expression tag |
| Ile 1075 | - | expression tag |
| Asp 1076 | - | expression tag |
| Asn 1077 | - | expression tag |
| Val 1078 | - | expression tag |
| Asp 1079 | - | expression tag |
| Ile 1080 | - | expression tag |
| Lys 1081 | - | expression tag |
| Gln 1082 | - | expression tag |
| Ile 1083 | - | expression tag |
| Glu 1084 | - | expression tag |
| Asp 1085 | - | expression tag |
| Lys 1086 | - | expression tag |
| Ile 1087 | - | expression tag |
| Glu 1088 | - | expression tag |
| Glu 1089 | - | expression tag |
| Ile 1090 | - | expression tag |
| Leu 1091 | - | expression tag |
| Ser 1092 | - | expression tag |
| Lys 1093 | - | expression tag |
| Ile 1094 | - | expression tag |
| Tyr 1095 | - | expression tag |
| His 1096 | - | expression tag |
| Ile 1097 | - | expression tag |
| Glu 1098 | - | expression tag |
| Asn 1099 | - | expression tag |
| Glu 1100 | - | expression tag |
| Ile 1101 | - | expression tag |
| Ala 1102 | - | expression tag |
| Arg 1103 | - | expression tag |
| Ile 1104 | - | expression tag |
| Lys 1105 | - | expression tag |
| Lys 1106 | - | expression tag |
| Leu 1107 | - | expression tag |
| Ile 1108 | - | expression tag |
| Gly 1109 | - | expression tag |
| Glu 1110 | - | expression tag |
| Ile 1111 | - | expression tag |
| Gly 1112 | - | expression tag |
| Gly 1113 | - | expression tag |
| Gly 1114 | - | expression tag |
| Gly 1115 | - | expression tag |
| Ser 1116 | - | expression tag |
| His 1117 | - | expression tag |
| His 1118 | - | expression tag |
| His 1119 | - | expression tag |
| His 1120 | - | expression tag |
| His 1121 | - | expression tag |
| His 1122 | - | expression tag |
| His 1123 | - | expression tag |
| His 1124 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 366831.8 | |
| Branched | Number of molecules | 15 |
| Total formula weight | 6975.6 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 5309.0 | |
| All* | Total formula weight | 379116.4 |
