6B4V
Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, EB | 16S ribosomal RNA | polymer | 1507 | 489561.2 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
2 | B, FB | 23S ribosomal RNA | polymer | 2880 | 936785.6 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
3 | C, GB | 5S ribosomal RNA | polymer | 120 | 38882.2 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
4 | D, IA, HB, MC | tRNA | polymer | 77 | 24846.9 | 4 | Escherichia coli K-12 | ||
5 | E, IB | 50S ribosomal protein L2 | polymer | 275 | 30401.4 | 2 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) In PDB | Thermus thermophilus HB27 | |
6 | F, JB | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q72I04) Pfam (PF00297) In PDB | Thermus thermophilus HB27 | |
7 | G, KB | 50S ribosomal protein L4 | polymer | 205 | 22744.3 | 2 | UniProt (Q72I05) Pfam (PF00573) In PDB | Thermus thermophilus HB27 | |
8 | H, LB | 50S ribosomal protein L5 | polymer | 182 | 21075.6 | 2 | UniProt (Q72I16) Pfam (PF00281) Pfam (PF00673) In PDB | Thermus thermophilus HB27 | |
9 | I, MB | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q72I19) Pfam (PF00347) In PDB | Thermus thermophilus HB27 | |
10 | J, NB | 50S ribosomal protein L9 | polymer | 148 | 16436.2 | 2 | UniProt (Q72GV5) Pfam (PF01281) Pfam (PF03948) In PDB | Thermus thermophilus HB27 | |
11 | K, OB | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (Q72IN1) Pfam (PF00572) In PDB | Thermus thermophilus HB27 | |
12 | L, PB | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 2 | UniProt (Q72I14) Pfam (PF00238) In PDB | Thermus thermophilus HB27 | |
13 | M, QB | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q72I23) Pfam (PF00828) In PDB | Thermus thermophilus HB27 | |
14 | N, RB | 50S ribosomal protein L16 | polymer | 141 | 15977.9 | 2 | UniProt (Q72I11) Pfam (PF00252) In PDB | Thermus thermophilus HB27 | |
15 | O, SB | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q72I33) Pfam (PF01196) In PDB | Thermus thermophilus HB27 | |
16 | P, TB | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q72I20) Pfam (PF00861) In PDB | Thermus thermophilus HB27 | |
17 | Q, UB | 50S ribosomal protein L19 | polymer | 146 | 17217.9 | 2 | UniProt (Q72JU9) Pfam (PF01245) In PDB | Thermus thermophilus HB27 | |
18 | R, VB | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (Q72L76) Pfam (PF00453) In PDB | Thermus thermophilus HB27 | |
19 | S, WB | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) In PDB | Thermus thermophilus HB27 | |
20 | T, XB | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q72I09) Pfam (PF00237) In PDB | Thermus thermophilus HB27 | |
21 | U, YB | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q72I06) Pfam (PF00276) In PDB | Thermus thermophilus HB27 | |
22 | V, ZB | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) In PDB | Thermus thermophilus HB27 | |
23 | W, AC | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) In PDB | Thermus thermophilus HB27 | |
24 | X, BC | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 2 | UniProt (Q72HR3) Pfam (PF01016) In PDB | Thermus thermophilus HB27 | |
25 | Y, CC | 50S ribosomal protein L28 | polymer | 98 | 11032.2 | 2 | UniProt (Q72G84) Pfam (PF00830) In PDB | Thermus thermophilus HB27 | |
26 | Z, DC | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q72I12) Pfam (PF00831) In PDB | Thermus thermophilus HB27 | |
27 | AA, EC | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q72I22) Pfam (PF00327) In PDB | Thermus thermophilus HB27 | |
28 | BA, FC | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q72JR0) Pfam (PF01197) In PDB | Thermus thermophilus HB27 | |
29 | CA, GC | 50S ribosomal protein L32 | polymer | 60 | 6734.1 | 2 | UniProt (P62652) Pfam (PF01783) In PDB | Thermus thermophilus HB27 | |
30 | DA, HC | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (Q72GW3) Pfam (PF00471) In PDB | Thermus thermophilus HB27 | |
31 | EA, IC | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus HB27 | |
32 | FA, JC | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q72L77) Pfam (PF01632) In PDB | Thermus thermophilus HB27 | |
33 | GA, KC | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q72I28) Pfam (PF00444) In PDB | Thermus thermophilus HB27 | |
34 | HA, LC | mRNA | polymer | 23 | 7545.6 | 2 | synthetic construct | ||
35 | JA, NC | Peptide chain release factor 1 | polymer | 368 | 41644.4 | 2 | UniProt (A7ZKY5) Pfam (PF03462) Pfam (PF00472) UniProt (by SIFTS) (P0A7I0) In PDB | Escherichia coli | |
36 | KA, OC | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P62662) Pfam (PF00318) In PDB | Thermus thermophilus HB27 | |
37 | LA, PC | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus HB27 | |
38 | MA, QC | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus HB27 | |
39 | NA, RC | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 2 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus HB27 | |
40 | OA, SC | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P62666) Pfam (PF01250) In PDB | Thermus thermophilus HB27 | |
41 | PA, TC | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 2 | UniProt (P62667) Pfam (PF00177) In PDB | Thermus thermophilus HB27 | |
42 | QA, UC | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P62668) Pfam (PF00410) In PDB | Thermus thermophilus HB27 | |
43 | RA, VC | 30S ribosomal protein S9 | polymer | 128 | 14429.7 | 2 | UniProt (P62669) Pfam (PF00380) In PDB | Thermus thermophilus HB27 | |
44 | SA, WC | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (P62653) Pfam (PF00338) In PDB | Thermus thermophilus HB27 | |
45 | TA, XC | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P62654) Pfam (PF00411) In PDB | Thermus thermophilus HB27 | |
46 | UA, YC | 30S ribosomal protein S12 | polymer | 132 | 14683.5 | 2 | UniProt (P61941) Pfam (PF00164) In PDB | Thermus thermophilus HB27 | |
47 | VA, ZC | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P62655) Pfam (PF00416) In PDB | Thermus thermophilus HB27 | |
48 | WA, AD | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 2 | UniProt (P62656) Pfam (PF00253) In PDB | Thermus thermophilus HB27 | |
49 | XA, BD | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (P62657) Pfam (PF00312) In PDB | Thermus thermophilus HB27 | |
50 | YA, CD | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (P62238) Pfam (PF00886) In PDB | Thermus thermophilus HB27 | |
51 | ZA, DD | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 2 | UniProt (P62658) Pfam (PF00366) In PDB | Thermus thermophilus HB27 | |
52 | AB, ED | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (P62659) Pfam (PF01084) In PDB | Thermus thermophilus HB27 | |
53 | BB, FD | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 2 | UniProt (P62660) Pfam (PF00203) In PDB | Thermus thermophilus HB27 | |
54 | CB, GD | 30S ribosomal protein S20 | polymer | 106 | 11722.1 | 2 | UniProt (P62661) Pfam (PF01649) In PDB | Thermus thermophilus HB27 | |
55 | DB, HD | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (P62611) Pfam (PF17070) UniProt (by SIFTS) (P62613) In PDB | Thermus thermophilus HB27 | |
56 | B, FB, A, D, M... | MAGNESIUM ION | non-polymer | 24.3 | 1683 | Chemie (MG) | |||
57 | B, FB | BLASTICIDIN S | non-polymer | 422.4 | 2 | Chemie (BLS) | |||
58 | CA, DA, ZB, GA, V... | ZINC ION | non-polymer | 65.4 | 10 | Chemie (ZN) |
Sequence modifications
B, FB: 6 - 2897 (GenBank: 46197919)
X, BC: 1 - 85 (UniProt: Q72HR3)
JA, NC: 1 - 360 (UniProt: A7ZKY5)
PDB | External Database | Details |
---|---|---|
C 154 | Unk 1534643 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 11 | Lys 11 | conflict |
PDB | External Database | Details |
---|---|---|
Leu 361 | - | expression tag |
Glu 362 | - | expression tag |
His 363 | - | expression tag |
His 364 | - | expression tag |
His 365 | - | expression tag |
His 366 | - | expression tag |
His 367 | - | expression tag |
His 368 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 112 |
Total formula weight | 4501862.1 | |
Non-Polymers* | Number of molecules | 1695 |
Total formula weight | 42404.3 | |
All* | Total formula weight | 4544266.4 |