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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6B4V

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, EB16S ribosomal RNApolymer1507489561.22GenBank (46197919)Thermus thermophilus HB27
2B, FB23S ribosomal RNApolymer2880936785.62GenBank (46197919)Thermus thermophilus HB27
3C, GB5S ribosomal RNApolymer12038882.22GenBank (46197919)Thermus thermophilus HB27
4D, IA, HB, MCtRNApolymer7724846.94Escherichia coli K-12
5E, IB50S ribosomal protein L2polymer27530401.42UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus HB27
6F, JB50S ribosomal protein L3polymer20622450.22UniProt (Q72I04)
Pfam (PF00297)
In PDB		Thermus thermophilus HB27
7G, KB50S ribosomal protein L4polymer20522744.32UniProt (Q72I05)
Pfam (PF00573)
In PDB		Thermus thermophilus HB27
8H, LB50S ribosomal protein L5polymer18221075.62UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus HB27
9I, MB50S ribosomal protein L6polymer18019568.92UniProt (Q72I19)
Pfam (PF00347)
In PDB		Thermus thermophilus HB27
10J, NB50S ribosomal protein L9polymer14816436.22UniProt (Q72GV5)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus HB27
11K, OB50S ribosomal protein L13polymer14015927.92UniProt (Q72IN1)
Pfam (PF00572)
In PDB		Thermus thermophilus HB27
12L, PB50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
Pfam (PF00238)
In PDB		Thermus thermophilus HB27
13M, QB50S ribosomal protein L15polymer15016319.12UniProt (Q72I23)
Pfam (PF00828)
In PDB		Thermus thermophilus HB27
14N, RB50S ribosomal protein L16polymer14115977.92UniProt (Q72I11)
Pfam (PF00252)
In PDB		Thermus thermophilus HB27
15O, SB50S ribosomal protein L17polymer11813750.12UniProt (Q72I33)
Pfam (PF01196)
In PDB		Thermus thermophilus HB27
16P, TB50S ribosomal protein L18polymer11212639.82UniProt (Q72I20)
Pfam (PF00861)
In PDB		Thermus thermophilus HB27
17Q, UB50S ribosomal protein L19polymer14617217.92UniProt (Q72JU9)
Pfam (PF01245)
In PDB		Thermus thermophilus HB27
18R, VB50S ribosomal protein L20polymer11813779.32UniProt (Q72L76)
Pfam (PF00453)
In PDB		Thermus thermophilus HB27
19S, WB50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
In PDB		Thermus thermophilus HB27
20T, XB50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)
In PDB		Thermus thermophilus HB27
21U, YB50S ribosomal protein L23polymer9610759.82UniProt (Q72I06)
Pfam (PF00276)
In PDB		Thermus thermophilus HB27
22V, ZB50S ribosomal protein L24polymer11012085.62UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus HB27
23W, AC50S ribosomal protein L25polymer20623238.62UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus HB27
24X, BC50S ribosomal protein L27polymer859529.12UniProt (Q72HR3)
Pfam (PF01016)
In PDB		Thermus thermophilus HB27
25Y, CC50S ribosomal protein L28polymer9811032.22UniProt (Q72G84)
Pfam (PF00830)
In PDB		Thermus thermophilus HB27
26Z, DC50S ribosomal protein L29polymer728670.32UniProt (Q72I12)
Pfam (PF00831)
In PDB		Thermus thermophilus HB27
27AA, EC50S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)
In PDB		Thermus thermophilus HB27
28BA, FC50S ribosomal protein L31polymer718300.52UniProt (Q72JR0)
Pfam (PF01197)
In PDB		Thermus thermophilus HB27
29CA, GC50S ribosomal protein L32polymer606734.12UniProt (P62652)
Pfam (PF01783)
In PDB		Thermus thermophilus HB27
30DA, HC50S ribosomal protein L33polymer546632.92UniProt (Q72GW3)
Pfam (PF00471)
In PDB		Thermus thermophilus HB27
31EA, IC50S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus HB27
32FA, JC50S ribosomal protein L35polymer657506.22UniProt (Q72L77)
Pfam (PF01632)
In PDB		Thermus thermophilus HB27
33GA, KC50S ribosomal protein L36polymer374435.42UniProt (Q72I28)
Pfam (PF00444)
In PDB		Thermus thermophilus HB27
34HA, LCmRNApolymer237545.62synthetic construct
35JA, NCPeptide chain release factor 1polymer36841644.42UniProt (A7ZKY5)
UniProt (by SIFTS) (P0A7I0)
Pfam (PF03462)
Pfam (PF00472)
In PDB		Escherichia coli
36KA, OC30S ribosomal protein S2polymer25629317.72UniProt (P62662)
Pfam (PF00318)
In PDB		Thermus thermophilus HB27
37LA, PC30S ribosomal protein S3polymer23926751.12UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus HB27
38MA, QC30S ribosomal protein S4polymer20924373.42UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus HB27
39NA, RC30S ribosomal protein S5polymer16217583.42UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus HB27
40OA, SC30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
In PDB		Thermus thermophilus HB27
41PA, TC30S ribosomal protein S7polymer15618051.02UniProt (P62667)
Pfam (PF00177)
In PDB		Thermus thermophilus HB27
42QA, UC30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
In PDB		Thermus thermophilus HB27
43RA, VC30S ribosomal protein S9polymer12814429.72UniProt (P62669)
Pfam (PF00380)
In PDB		Thermus thermophilus HB27
44SA, WC30S ribosomal protein S10polymer10511955.02UniProt (P62653)
Pfam (PF00338)
In PDB		Thermus thermophilus HB27
45TA, XC30S ribosomal protein S11polymer12913737.92UniProt (P62654)
Pfam (PF00411)
In PDB		Thermus thermophilus HB27
46UA, YC30S ribosomal protein S12polymer13214683.52UniProt (P61941)
Pfam (PF00164)
In PDB		Thermus thermophilus HB27
47VA, ZC30S ribosomal protein S13polymer12614338.92UniProt (P62655)
Pfam (PF00416)
In PDB		Thermus thermophilus HB27
48WA, AD30S ribosomal protein S14 type Zpolymer617158.72UniProt (P62656)
Pfam (PF00253)
In PDB		Thermus thermophilus HB27
49XA, BD30S ribosomal protein S15polymer8910578.42UniProt (P62657)
Pfam (PF00312)
In PDB		Thermus thermophilus HB27
50YA, CD30S ribosomal protein S16polymer8810410.02UniProt (P62238)
Pfam (PF00886)
In PDB		Thermus thermophilus HB27
51ZA, DD30S ribosomal protein S17polymer10512324.72UniProt (P62658)
Pfam (PF00366)
In PDB		Thermus thermophilus HB27
52AB, ED30S ribosomal protein S18polymer8810258.32UniProt (P62659)
Pfam (PF01084)
In PDB		Thermus thermophilus HB27
53BB, FD30S ribosomal protein S19polymer9310605.52UniProt (P62660)
Pfam (PF00203)
In PDB		Thermus thermophilus HB27
54CB, GD30S ribosomal protein S20polymer10611722.12UniProt (P62661)
Pfam (PF01649)
In PDB		Thermus thermophilus HB27
55DB, HD30S ribosomal protein Thxpolymer273350.02UniProt (P62611)
UniProt (by SIFTS) (P62613)
Pfam (PF17070)
In PDB		Thermus thermophilus HB27
56B, FB, A, D, M...MAGNESIUM IONnon-polymer24.31683Chemie (MG)
57B, FBBLASTICIDIN Snon-polymer422.42Chemie (BLS)
58CA, DA, ZB, GA, V...ZINC IONnon-polymer65.410Chemie (ZN)
Sequence modifications
B, FB: 6 - 2897 (GenBank: 46197919)
PDBExternal DatabaseDetails
C 154Unk 1534643conflict
X, BC: 1 - 85 (UniProt: Q72HR3)
PDBExternal DatabaseDetails
Arg 11Lys 11conflict
JA, NC: 1 - 360 (UniProt: A7ZKY5)
PDBExternal DatabaseDetails
Leu 361-expression tag
Glu 362-expression tag
His 363-expression tag
His 364-expression tag
His 365-expression tag
His 366-expression tag
His 367-expression tag
His 368-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains112
Total formula weight4501862.1
Non-Polymers*Number of molecules1695
Total formula weight42404.3
All*Total formula weight4544266.4
*Water molecules are not included.

219140

PDB entries from 2024-05-01

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