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5ZGR

Crystal structure of NDM-1 at pH7.3 (HEPES) in complex with hydrolyzed ampicillin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Metallo-beta-lactamase type 2polymer24225631.82UniProt (C7C422)
Pfam (PF00753)
Klebsiella pneumoniaeB2 metallo-beta-lactamase,Beta-lactamase type II,Metallo-beta-lactamase NDM-1,Metallo-beta-lactamase type II,New Delhi metallo-beta-lactamase-1,NDM-1
2C, D, F, G
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
3E, H
(A, B)
(2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acidnon-polymer367.42Chemie (ZZ7)
4I
(B)
GLYCEROLnon-polymer92.11Chemie (GOL)
5J, K
(A, B)
waterwater18.0698Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight51263.6
Non-Polymers*Number of molecules7
Total formula weight1088.6
All*Total formula weight52352.2
*Water molecules are not included.

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PDB entries from 2025-12-03

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