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5ZGP

Crystal structure of NDM-1 at pH6.2 (Bis-Tris) in complex with hydrolyzed ampicillin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Metallo-beta-lactamase type 2polymer24225631.82UniProt (C7C422)Klebsiella pneumoniaeB2 metallo-beta-lactamase,Beta-lactamase type II,Metallo-beta-lactamase NDM-1,Metallo-beta-lactamase type II,New Delhi metallo-beta-lactamase-1,NDM-1
2C, D, H, I
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
3E
(A)
DI(HYDROXYETHYL)ETHERnon-polymer106.11Chemie (PEG)
PubChem (8117)
4F, J
(A, B)
(2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acidnon-polymer367.42Chemie (ZZ7)
PubChem (53364402)
PubChem (76967799)
PubChem (76967800)
PubChem (100971666)
PubChem (101043514)
PubChem (6453491)
PubChem (6914605)
PubChem (100971667)
PubChem (101505298)
PubChem (101543018)
PubChem (11726464)
PubChem (131698399)
PubChem (145865052)
PubChem (163410307)
5G
(A)
GLYCEROLnon-polymer92.11Chemie (GOL)
PubChem (753)
6K, L
(A, B)
waterwater18.0662Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight51263.6
Non-Polymers*Number of molecules8
Total formula weight1194.7
All*Total formula weight52458.3
*Water molecules are not included.

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PDB entries from 2026-05-13

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