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5ZGE

Crystal structure of NDM-1 at pH5.5 (Bis-Tris) in complex with hydrolyzed ampicillin

Replaces:  3Q6X
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Metallo-beta-lactamase type 2polymer24225631.82UniProt (C7C422)
Pfam (PF00753)
Klebsiella pneumoniaeB2 metallo-beta-lactamase,Beta-lactamase type II,Metallo-beta-lactamase NDM-1,Metallo-beta-lactamase type II,New Delhi metallo-beta-lactamase-1,NDM-1
2C, H
(A, B)
(2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acidnon-polymer367.42Chemie (ZZ7)
3D, E, G, I
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
4F, J
(A, B)
HYDROXIDE IONnon-polymer17.02Chemie (OH)
5K, L
(A, B)
waterwater18.0600Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight51263.6
Non-Polymers*Number of molecules8
Total formula weight1030.5
All*Total formula weight52294.1
*Water molecules are not included.

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PDB entries from 2025-12-10

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