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5Z86

azide-bound cytochrome c oxidase structure determined using the crystals exposed to 20 mM azide solution for 3 days

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, N
(A, N)
Cytochrome c oxidase subunit 1polymer51457093.92UniProt (P00396)
Pfam (PF00115)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide I
2B, O
(B, O)
Cytochrome c oxidase subunit 2polymer22726068.42UniProt (P68530)
Pfam (PF02790)
Pfam (PF00116)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide II
3C, P
(C, P)
Cytochrome c oxidase subunit 3polymer26129957.62UniProt (P00415)
Pfam (PF00510)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide III
4D, Q
(D, Q)
Cytochrome c oxidase subunit 4 isoform 1, mitochondrialpolymer14717179.62UniProt (P00423)
Pfam (PF02936)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide IV,Cytochrome c oxidase subunit IV isoform 1,COX IV-1
5E, R
(E, R)
Cytochrome c oxidase subunit 5A, mitochondrialpolymer10912453.12UniProt (P00426)
Pfam (PF02284)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide Va
6F, S
(F, S)
Cytochrome c oxidase subunit 5B, mitochondrialpolymer9810684.02UniProt (P00428)
Pfam (PF01215)
Bos taurus (Bovine)cytochrome c oxidase subunit 6, Cytochrome c oxidase polypeptide VIa,Cytochrome c oxidase polypeptide Vb
7G, T
(G, T)
Cytochrome c oxidase subunit 6A2, mitochondrialpolymer859629.82UniProt (P07471)
Pfam (PF02046)
Bos taurus (Bovine)cytochrome c oxidase subunit 7, Cytochrome c oxidase polypeptide VIa-heart,COXVIAH,Cytochrome c oxidase polypeptide VIb
8H, U
(H, U)
Cytochrome c oxidase subunit 6B1polymer8510039.22UniProt (P00429)
Pfam (PF02297)
Bos taurus (Bovine)cytochrome c oxidase subunit 8, Cytochrome c oxidase polypeptide VII,Cytochrome c oxidase subunit AED,Cytochrome c oxidase subunit VIb isoform 1,COX VIb-1
9I, V
(I, V)
Cytochrome c oxidase subunit 6Cpolymer738537.02UniProt (P04038)
Pfam (PF02937)
Bos taurus (Bovine)cytochrome c oxidase subunit 9, Cytochrome c oxidase polypeptide VIc,Cytochrome c oxidase subunit STA
10J, W
(J, W)
Cytochrome c oxidase subunit 7A1, mitochondrialpolymer596682.72UniProt (P07470)
Pfam (PF02238)
Bos taurus (Bovine)cytochrome c oxidase subunit 10, Cytochrome c oxidase subunit VIIIc,VIIIC,Cytochrome c oxidase subunit VIIa-heart,Cytochrome c oxidase subunit VIIa-H,Cytochrome c oxidase subunit VIIa-muscle,Cytochrome c oxidase subunit VIIa-M
11K, X
(K, X)
Cytochrome c oxidase subunit 7B, mitochondrialpolymer566365.22UniProt (P13183)
Pfam (PF05392)
Bos taurus (Bovine)cytochrome c oxidase subunit 11, Cytochrome c oxidase polypeptide VIIb,IHQ
12L, Y
(L, Y)
Cytochrome c oxidase subunit 7C, mitochondrialpolymer475449.42UniProt (P00430)
Pfam (PF02935)
Bos taurus (Bovine)cytochrome c oxidase subunit 12. Cytochrome c oxidase polypeptide VIIIA,Cytochrome c oxidase polypeptide VIIc
13M, Z
(M, Z)
Cytochrome c oxidase subunit 8B, mitochondrialpolymer464967.82UniProt (P10175)
Pfam (PF02285)
Bos taurus (Bovine)cytochrome c oxidase subunit 13, Cytochrome c oxidase polypeptide VIII-heart,Cytochrome c oxidase subunit 8-1,Cytochrome c oxidase subunit 8H,IX,VIIIb
14AA, BA, TC, UC
(A, N)
HEME-Anon-polymer852.84Chemie (HEA)
15CA, VC
(A, N)
COPPER (II) IONnon-polymer63.52Chemie (CU)
16DA, WC
(A, N)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
17EA, XC
(A, N)
SODIUM IONnon-polymer23.02Chemie (NA)
18FA, GA, YC, ZC
(A, N)
AZIDE IONnon-polymer42.04Chemie (AZI)
19AD, BF, CB, GB, HA...
(N, Z, C, A, P)
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEnon-polymer749.08Chemie (PGV)
20AC, BC, CC, CD, DC...
(E, N, P, F, Q...)
1,2-ETHANEDIOLnon-polymer62.171Chemie (EDO)
21AF, BD, GE, RC, SB...
(Y, N, Q, L, D...)
TRISTEAROYLGLYCEROLnon-polymer891.56Chemie (TGL)
22EB, KC, PC, SD, WA...
(C, G, J, P, B...)
CHOLIC ACIDnon-polymer408.68Chemie (CHD)
23ND, XA
(O, B)
DINUCLEAR COPPER IONnon-polymer127.12Chemie (CUA)
24AB, BE, CE, CF, IB...
(C, P, Z, M)
DECYL-BETA-D-MALTOPYRANOSIDEnon-polymer482.68Chemie (DMU)
25BB, VD
(C, P)
UNKNOWN ATOM OR IONnon-polymer2Chemie (UNX)
26DB, JC, UE, XD
(C, G, T, P)
CARDIOLIPINnon-polymer1464.04Chemie (CDL)
27AE, FB, HB, IC, TD...
(P, C, G, T)
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEnon-polymer768.16Chemie (PEK)
28OD, YB
(O, E)
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDEnon-polymer759.12Chemie (PSC)
29EC, PE
(F, S)
ZINC IONnon-polymer65.42Chemie (ZN)
30AG, BG, CG, DF, EF...
(X, Y, Z, A, B...)
waterwater18.01595Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains26
Total formula weight410215.6
Non-Polymers*Number of molecules133
Total formula weight39045.6
All*Total formula weight449261.2
*Water molecules are not included.

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PDB entries from 2024-11-06

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