5Z21
The ternary structure of D-lactate dehydrogenase from Fusobacterium nucleatum with NADH and oxamate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | D-lactate dehydrogenase | polymer | 358 | 40788.8 | 4 | UniProt (Q8RG11) Pfam (PF00389) Pfam (PF02826) | Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) | |
| 2 | E, G, I, K (A, B, C, D) | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | non-polymer | 665.4 | 4 | Chemie (NAI) PubChem (928) PubChem (11250888) PubChem (12309341) PubChem (16219774) PubChem (44119956) PubChem (44415182) PubChem (439153) PubChem (124934832) PubChem (126455899) PubChem (134693949) PubChem (12309339) PubChem (12309347) PubChem (140875346) PubChem (162951601) PubChem (162951600) PubChem (164575491) PubChem (169545638) PubChem (170905224) PubChem (174316169) PubChem (94865921) PubChem (94865923) PubChem (124432988) PubChem (124934831) PubChem (124934833) PubChem (129607000) PubChem (129628338) PubChem (146167236) PubChem (162951602) PubChem (174084875) | |||
| 3 | F, H, J, L (A, B, C, D) | OXAMIC ACID | non-polymer | 89.0 | 4 | Chemie (OXM) PubChem (974) | |||
| 4 | M, N, O, P (A, B, C, D) | water | water | 18.0 | 98 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 335 (UniProt: Q8RG11)
| PDB | External Database | Details |
|---|---|---|
| Met -22 | - | expression tag |
| Asn -21 | - | expression tag |
| His -20 | - | expression tag |
| Lys -19 | - | expression tag |
| Val -18 | - | expression tag |
| His -17 | - | expression tag |
| His -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| Ile -11 | - | expression tag |
| Glu -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Arg -8 | - | expression tag |
| His -7 | - | expression tag |
| Met -6 | - | expression tag |
| Glu -5 | - | expression tag |
| Leu -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Thr -2 | - | expression tag |
| Leu -1 | - | expression tag |
| Glu 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 163155.3 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 3018.0 | |
| All* | Total formula weight | 166173.3 |
