5Z1B
Structure of Bifidobacterium dentium beta-glucuronidase complexed with coumarin-3-O-glucuronide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | Glycosyl hydrolase family 2, TIM barrel domain protein | polymer | 692 | 77131.4 | 4 | UniProt (E0QAF3) Pfam (PF02837) Pfam (PF00703) Pfam (PF02836) In PDB | Bifidobacterium dentium ATCC 27679 | |
2 | A, B, C, D | beta-D-glucopyranuronic acid | non-polymer | 194.1 | 4 | Chemie (BDP) | |||
3 | A, B, C, D | 3-HYDROXY-2H-CHROMEN-2-ONE | non-polymer | 162.1 | 4 | Chemie (SE2) | |||
4 | water | water | 18.0 | 2313 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 668 (UniProt: E0QAF3)
PDB | External Database | Details |
---|---|---|
Met -23 | - | initiating methionine |
His -22 | - | expression tag |
His -21 | - | expression tag |
His -20 | - | expression tag |
His -19 | - | expression tag |
His -18 | - | expression tag |
His -17 | - | expression tag |
Ser -16 | - | expression tag |
Ser -15 | - | expression tag |
Gly -14 | - | expression tag |
Val -13 | - | expression tag |
Asp -12 | - | expression tag |
Leu -11 | - | expression tag |
Gly -10 | - | expression tag |
Thr -9 | - | expression tag |
Glu -8 | - | expression tag |
Asn -7 | - | expression tag |
Leu -6 | - | expression tag |
Tyr -5 | - | expression tag |
Phe -4 | - | expression tag |
Gln -3 | - | expression tag |
Ser -2 | - | expression tag |
Asn -1 | - | expression tag |
Gly 0 | - | expression tag |
Ala 479 | Glu 479 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 308525.7 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 1425.1 | |
All* | Total formula weight | 309950.8 |