5YRV
Diol dehydratase, AdoCbl/1,2-propanediol, anaerobically-prepared crystal
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G, J (A, D, G, J) | Diol dehydrase alpha subunit | polymer | 554 | 60408.1 | 4 | UniProt (Q59470) Pfam (PF02286) | Klebsiella oxytoca | Propanediol dehydratase,Propanediol dehydratase large subunit |
| 2 | B, E, H, K (B, E, H, K) | Diol dehydrase beta subunit | polymer | 200 | 21721.9 | 4 | UniProt (Q59471) Pfam (PF02288) | Klebsiella oxytoca | |
| 3 | C, F, I, L (C, F, I, L) | Diol dehydrase gamma subunit | polymer | 137 | 15611.7 | 4 | UniProt (Q59472) Pfam (PF02287) | Klebsiella oxytoca | Propanediol dehydratase,Propanediol dehydratase small subunit |
| 4 | EA, M, NA, V (G, A, J, D) | CALCIUM ION | non-polymer | 40.1 | 4 | Chemie (CA) | |||
| 5 | FA, GA, N, O, OA... (G, A, J, D) | POTASSIUM ION | non-polymer | 39.1 | 8 | Chemie (K) | |||
| 6 | HA, P, Y (G, A, D) | S-1,2-PROPANEDIOL | non-polymer | 76.1 | 3 | Chemie (PGO) | |||
| 7 | IA, Q, QA, Z (G, A, J, D) | 5'-DEOXYADENOSINE | non-polymer | 251.2 | 4 | Chemie (5AD) | |||
| 8 | AA, BA, DA, JA, KA... (D, F, G, I, A...) | CHLORIDE ION | non-polymer | 35.5 | 12 | Chemie (CL) | |||
| 9 | CA, LA, T, TA (E, H, B, K) | COBALAMIN | non-polymer | 1330.4 | 4 | Chemie (B12) | |||
| 10 | AB, BB, CB, DB, EB... (F, G, H, I, J...) | water | water | 18.0 | 3299 | Chemie (HOH) |
Sequence modifications
B, E, H, K: 46 - 224 (UniProt: Q59471)
C, F, I, L: 38 - 173 (UniProt: Q59472)
| PDB | External Database | Details |
|---|---|---|
| Met 25 | - | expression tag |
| Ser 26 | - | expression tag |
| Ser 27 | - | expression tag |
| His 28 | - | expression tag |
| His 29 | - | expression tag |
| His 30 | - | expression tag |
| His 31 | - | expression tag |
| His 32 | - | expression tag |
| His 33 | - | expression tag |
| Ser 34 | - | expression tag |
| Ala 35 | - | expression tag |
| Ala 36 | - | expression tag |
| Leu 37 | - | expression tag |
| Glu 38 | - | expression tag |
| Val 39 | - | expression tag |
| Leu 40 | - | expression tag |
| Phe 41 | - | expression tag |
| Gln 42 | - | expression tag |
| Gly 43 | - | expression tag |
| Pro 44 | - | expression tag |
| Gly 45 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 37 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 390967.0 | |
| Non-Polymers* | Number of molecules | 35 |
| Total formula weight | 7453.2 | |
| All* | Total formula weight | 398420.2 |
