5YRT
Diol dehydratase, AdoCbl/substrate-free, anaerobically-prepared crystal
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G, J (A, D, G, J) | Diol dehydrase alpha subunit | polymer | 554 | 60408.1 | 4 | UniProt (Q59470) Pfam (PF02286) | Klebsiella oxytoca | Propanediol dehydratase,Propanediol dehydratase large subunit |
| 2 | B, E, H, K (B, E, H, K) | Diol dehydrase beta subunit | polymer | 200 | 21721.9 | 4 | UniProt (Q59471) Pfam (PF02288) | Klebsiella oxytoca | |
| 3 | C, F, I, L (C, F, I, L) | Diol dehydrase gamma subunit | polymer | 137 | 15611.7 | 4 | UniProt (Q59472) Pfam (PF02287) | Klebsiella oxytoca | Propanediol dehydratase,Propanediol dehydratase small subunit |
| 4 | CA, KA, M, U (G, J, A, D) | CALCIUM ION | non-polymer | 40.1 | 4 | Chemie (CA) | |||
| 5 | DA, EA, LA, MA, N... (G, J, A, D) | POTASSIUM ION | non-polymer | 39.1 | 8 | Chemie (K) | |||
| 6 | FA, NA, P, X (G, J, A, D) | 5'-DEOXYADENOSINE | non-polymer | 251.2 | 4 | Chemie (5AD) | |||
| 7 | BA, GA, HA, JA, OA... (F, G, I, J, A...) | CHLORIDE ION | non-polymer | 35.5 | 12 | Chemie (CL) | |||
| 8 | AA, IA, QA, S (E, H, K, B) | COBALAMIN | non-polymer | 1330.4 | 4 | Chemie (B12) | |||
| 9 | AB, BB, CB, DB, SA... (I, J, K, L, A...) | water | water | 18.0 | 2950 | Chemie (HOH) |
Sequence modifications
B, E, H, K: 46 - 224 (UniProt: Q59471)
C, F, I, L: 38 - 173 (UniProt: Q59472)
| PDB | External Database | Details |
|---|---|---|
| Met 25 | - | expression tag |
| Ser 26 | - | expression tag |
| Ser 27 | - | expression tag |
| His 28 | - | expression tag |
| His 29 | - | expression tag |
| His 30 | - | expression tag |
| His 31 | - | expression tag |
| His 32 | - | expression tag |
| His 33 | - | expression tag |
| Ser 34 | - | expression tag |
| Ala 35 | - | expression tag |
| Ala 36 | - | expression tag |
| Leu 37 | - | expression tag |
| Glu 38 | - | expression tag |
| Val 39 | - | expression tag |
| Leu 40 | - | expression tag |
| Phe 41 | - | expression tag |
| Gln 42 | - | expression tag |
| Gly 43 | - | expression tag |
| Pro 44 | - | expression tag |
| Gly 45 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 37 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 390967.0 | |
| Non-Polymers* | Number of molecules | 32 |
| Total formula weight | 7224.9 | |
| All* | Total formula weight | 398191.9 |
