5YMS
Structural basis of glycan specificity and identification of a novel glycan binding cavity in human P[19] rotavirus
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Outer capsid protein VP4 | polymer | 161 | 18253.3 | 8 | UniProt (Q9Q2P6) Pfam (PF00426) | Human rotavirus A | rotavirus VP8* protein |
| 2 | I, J (I, J) | beta-D-galactopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G00033MO) | |||
| 3 | K, L, M, N, O... (A, B, C, D, E...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) | |||
| 4 | Q, R, S, T, U... (A, B, C, D, E...) | water | water | 18.0 | 982 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H: 1 - 160 (UniProt: Q9Q2P6)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 146026.5 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1173.1 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1327.2 | |
| All* | Total formula weight | 148526.8 |
