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5YJW

Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with the competitive inhibitor, stigmatellin.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrialpolymer48454077.91UniProt (P32340)
Pfam (PF07992)
Pfam (PF22366)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Internal NADH dehydrogenase,NADH:ubiquinone reductase (non-electrogenic)
2B
(A)
FLAVIN-ADENINE DINUCLEOTIDEnon-polymer785.51Chemie (FAD)
3C, D, E, F
(A)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
4G
(A)
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOLnon-polymer354.41Chemie (PE4)
5H
(A)
HEXAETHYLENE GLYCOLnon-polymer282.31Chemie (P6G)
6I, J, K, L, U...
(A)
GLYCEROLnon-polymer92.17Chemie (GOL)
7M, N
(A)
TETRAETHYLENE GLYCOLnon-polymer194.22Chemie (PG4)
8O, P, S
(A)
DI(HYDROXYETHYL)ETHERnon-polymer106.13Chemie (PEG)
9Q, R, T
(A)
TRIETHYLENE GLYCOLnon-polymer150.23Chemie (PGE)
10X, Y
(A)
2-(N-MORPHOLINO)-ETHANESULFONIC ACIDnon-polymer195.22Chemie (MES)
11AA, Z
(A)
STIGMATELLIN Anon-polymer514.62Chemie (SMA)
12BA
(A)
waterwater18.0345Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight54077.9
Non-Polymers*Number of molecules26
Total formula weight4741.3
All*Total formula weight58819.2
*Water molecules are not included.

249697

PDB entries from 2026-02-25

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