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5Y7M

Crystal structure of PhoRpp38 bound to a K-turn in P12.1 helix

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(A, C)
50S ribosomal protein L7Aepolymer13214645.02UniProt (P62009)
Pfam (PF01248)
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)Ribonuclease P protein component Rpp38,RNase P component Rpp38,Ribosomal protein L8e
2B, D
(B, D)
RNA (52-MER)polymer5116552.92Pyrococcus horikoshii OT3
3E, L
(B, D)
GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.22Chemie (GTP)
4F, G, H, I, J...
(B, C, D)
SULFATE IONnon-polymer96.19Chemie (SO4)
Sequence modifications
A, C: 2 - 124 (UniProt: P62009)
PDBExternal DatabaseDetails
Met 1-initiating methionine
Leu 125-expression tag
Glu 126-expression tag
His 127-expression tag
His 128-expression tag
His 129-expression tag
His 130-expression tag
His 131-expression tag
His 132-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight62395.9
Non-Polymers*Number of molecules11
Total formula weight1910.9
All*Total formula weight64306.8
*Water molecules are not included.

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PDB entries from 2025-12-17

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