5Y5S
Structure of photosynthetic LH1-RC super-complex at 1.9 angstrom resolution
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | C | Photosynthetic reaction center cytochrome c subunit | polymer | 404 | 43177.5 | 1 | UniProt (D2Z0P5) Pfam (PF02276) In PDB | Thermochromatium tepidum | |
| 2 | L | Photosynthetic reaction center L subunit | polymer | 281 | 31520.8 | 1 | UniProt (D2Z0P3) Pfam (PF00124) In PDB | Thermochromatium tepidum | |
| 3 | M | Photosynthetic reaction center M subunit | polymer | 325 | 36605.7 | 1 | UniProt (A8ASG6) Pfam (PF00124) In PDB | Thermochromatium tepidum | |
| 4 | H | Photosynthetic reaction center H subunit | polymer | 259 | 28213.3 | 1 | UniProt (D2Z0P9) Pfam (PF03967) Pfam (PF05239) In PDB | Thermochromatium tepidum | |
| 5 | A, D, F, I, K... | LH1 alpha polypeptide | polymer | 61 | 7034.4 | 16 | UniProt (D2Z0P2) Pfam (PF00556) In PDB | Thermochromatium tepidum | |
| 6 | B, E, G, J, N... | LH1 beta polypeptide | polymer | 47 | 5534.5 | 16 | UniProt (D2Z0P1) Pfam (PF00556) In PDB | Thermochromatium tepidum | |
| 7 | C | HEME C | non-polymer | 618.5 | 4 | Chemie (HEC) | |||
| 8 | C | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 9 | C, H | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 10 | M, C, L | SULFATE ION | non-polymer | 96.1 | 3 | Chemie (SO4) | |||
| 11 | C | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 1 | Chemie (LHG) | |||
| 12 | A, 3, D, M, C... | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE | non-polymer | 749.0 | 10 | Chemie (PGV) | |||
| 13 | A, U, K, 3, M... | BACTERIOCHLOROPHYLL A | non-polymer | 911.5 | 36 | Chemie (BCL) | |||
| 14 | M, L | BACTERIOPHEOPHYTIN A | non-polymer | 889.2 | 2 | Chemie (BPH) | |||
| 15 | L, 7, M | Ubiquinone-8 | non-polymer | 727.1 | 5 | Chemie (UQ8) | |||
| 16 | B, 4, X, E, 6... | UNKNOWN LIGAND | non-polymer | 16 | Chemie (UNL) | ||||
| 17 | L | FE (III) ION | non-polymer | 55.8 | 1 | Chemie (FE) | |||
| 18 | M | MENAQUINONE 8 | non-polymer | 717.1 | 1 | Chemie (MQ8) | |||
| 19 | U, A, V, N, M... | SPIRILLOXANTHIN | non-polymer | 596.9 | 17 | Chemie (CRT) | |||
| 20 | U, 3, K, M, W... | DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE | non-polymer | 692.0 | 13 | Chemie (PEF) | |||
| 21 | V, O, M, I, J | LAURYL DIMETHYLAMINE-N-OXIDE | non-polymer | 229.4 | 5 | Chemie (LDA) | |||
| 22 | K, D, Y, M, Q... | CARDIOLIPIN | non-polymer | 1464.0 | 9 | Chemie (CDL) | |||
| 23 | F, M | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 2 | Chemie (LMT) | |||
| 24 | J, 2, A, B, N... | CALCIUM ION | non-polymer | 40.1 | 16 | Chemie (CA) | |||
| 25 | water | water | 18.0 | 954 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 36 |
| Total formula weight | 340619.6 | |
| Non-Polymers* | Number of molecules | 144 |
| Total formula weight | 85313.9 | |
| All* | Total formula weight | 425933.5 |
