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5XXD

Crystal structure of SmyD3 in complex with covalent inhibitor 1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Smyd3 methyltransferasepolymer42348602.51Pfam (PF00856)
Pfam (PF01753)
UniProt (by SIFTS) (Q9H7B4)
Homo sapiens
2B
(A)
S-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
3C, D, E
(A)
ZINC IONnon-polymer65.43Chemie (ZN)
4F
(A)
ethyl 4-(5,6,7,8-tetrahydroacridin-3-ylcarbonyl)piperazine-1-carboxylatenon-polymer367.41Chemie (8NR)
5G
(A)
waterwater18.0144Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight48602.5
Non-Polymers*Number of molecules5
Total formula weight962.1
All*Total formula weight49564.6
*Water molecules are not included.

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PDB entries from 2025-07-23

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