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5XP6

native structure of NDM-1 crystallized at pH5.5

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Metallo-beta-lactamase type 2polymer24325718.91UniProt (C7C422)
Pfam (PF00753)
Klebsiella pneumoniaeB2 metallo-beta-lactamase,Beta-lactamase type II,Metallo-beta-lactamase NDM-1,Metallo-beta-lactamase type II,New Delhi metallo-beta-lactamase-1,NDM-1
2B, C
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
3D
(A)
HYDROXIDE IONnon-polymer17.01Chemie (OH)
4E, F, G, H, I
(A)
1,2-ETHANEDIOLnon-polymer62.15Chemie (EDO)
5J
(A)
SUCCINIC ACIDnon-polymer118.11Chemie (SIN)
6K
(A)
waterwater18.0330Chemie (HOH)
Sequence modifications
A: 29 - 270 (UniProt: C7C422)
PDBExternal DatabaseDetails
Ser 28-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight25718.9
Non-Polymers*Number of molecules9
Total formula weight576.3
All*Total formula weight26295.2
*Water molecules are not included.

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PDB entries from 2025-06-11

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