5XNL
Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AA, B, CA, CB... (1, 2, G, N, Y...) | Chlorophyll a-b binding protein 8, chloroplastic | polymer | 232 | 24952.1 | 10 | UniProt (P27490) Pfam (PF00504) | Pisum sativum (Garden pea) | LHCII type I CAB-8 |
| 2 | C, EA (3, 7) | Chlorophyll a-b binding protein, chloroplastic | polymer | 243 | 26545.2 | 2 | UniProt (Q04918) Pfam (PF00504) | Pisum sativum (Garden pea) | |
| 3 | D, FA (4, 8) | Light harvesting chlorophyll a/b-binding protein Lhcb6, CP24 | polymer | 210 | 22859.0 | 2 | Pfam (PF00504) UniProt (by SIFTS) (A0A2D0TCJ3) | Pisum sativum | |
| 4 | E, GA (A, a) | Photosystem II protein D1 | polymer | 344 | 38147.4 | 2 | UniProt (P06585) Pfam (PF00124) | Pisum sativum (Garden pea) | PSII D1 protein,32 kDa thylakoid membrane protein,Photosystem II Q(B) protein |
| 5 | F, HA (B, b) | Photosystem II CP47 reaction center protein | polymer | 507 | 56117.8 | 2 | UniProt (Q9XQR6) Pfam (PF00421) | Pisum sativum (Garden pea) | PSII 47 kDa protein,Protein CP-47 |
| 6 | G, IA (C, c) | Photosystem II CP43 reaction center protein | polymer | 473 | 52035.6 | 2 | UniProt (P06004) Pfam (PF00421) | Pisum sativum (Garden pea) | PSII 43 kDa protein,Photosystem II 44 kDa chlorophyll apoprotein,Protein CP-43 |
| 7 | H, JA (D, d) | Photosystem II D2 protein | polymer | 353 | 39557.2 | 2 | UniProt (P06006) Pfam (PF00124) | Pisum sativum (Garden pea) | PSII D2 protein,Photosystem Q(A) protein |
| 8 | I, KA (E, e) | Cytochrome b559 subunit alpha | polymer | 83 | 9421.6 | 2 | UniProt (P13554) Pfam (PF00283) Pfam (PF00284) | Pisum sativum (Garden pea) | PSII reaction center subunit V |
| 9 | J, LA (F, f) | Cytochrome b559 subunit beta, PsbF | polymer | 39 | 4488.3 | 2 | Pfam (PF00283) UniProt (by SIFTS) (P62096) | Pisum sativum | |
| 10 | L, NA (H, h) | Photosystem II reaction center protein H | polymer | 73 | 7863.1 | 2 | UniProt (Q9XQR3) Pfam (PF00737) | Pisum sativum (Garden pea) | PSII-H,Photosystem II 10 kDa phosphoprotein,Photosystem II 9 kDa phosphoprotein |
| 11 | M, OA (I, i) | Photosystem II reaction center protein I, PsbI | polymer | 36 | 4184.9 | 2 | Pfam (PF02532) UniProt (by SIFTS) (D5MAJ9) | Pisum sativum | |
| 12 | N, PA (J, j) | Photosystem II reaction center protein J | polymer | 40 | 4116.8 | 2 | UniProt (P13555) Pfam (PF01788) | Pisum sativum (Garden pea) | PSII-J |
| 13 | O, QA (K, k) | Photosystem II reaction center protein K | polymer | 61 | 6912.3 | 2 | UniProt (D5MAJ8) Pfam (PF02533) | Pisum sativum (Garden pea) | PSII-K |
| 14 | P, RA (L, l) | Photosystem II reaction center protein L | polymer | 38 | 4498.1 | 2 | UniProt (P60147) Pfam (PF02419) | Pisum sativum (Garden pea) | PSII-L |
| 15 | Q, SA (M, m) | Photosystem II reaction center protein M | polymer | 34 | 3756.5 | 2 | UniProt (P69529) Pfam (PF05151) | Pisum sativum (Garden pea) | PSII-M |
| 16 | S, UA (O, o) | Oxygen-evolving enhancer protein 1, chloroplastic | polymer | 248 | 26554.6 | 2 | UniProt (P14226) Pfam (PF01716) | Pisum sativum (Garden pea) | OEE1,33 kDa subunit of oxygen evolving system of photosystem II,33 kDa thylakoid membrane protein,OEC 33 kDa subunit |
| 17 | T, VA (P, p) | Oxygen-evolving enhancer protein 2, chloroplastic | polymer | 186 | 20287.5 | 2 | UniProt (P16059) Pfam (PF01789) | Pisum sativum (Garden pea) | OEE2,23 kDa subunit of oxygen evolving system of photosystem II,23 kDa thylakoid membrane protein,OEC 23 kDa subunit |
| 18 | U, WA (Q, q) | Oxygen-evolving enhancer protein 3 | polymer | 148 | 16398.9 | 2 | UniProt (Q7Y1T5) Pfam (PF05757) | Pisum sativum (Garden pea) | |
| 19 | V, XA (R, r) | Light harvesting chlorophyll a/b-binding protein Lhcb4, CP29 | polymer | 246 | 27138.7 | 2 | Pfam (PF00504) UniProt (by SIFTS) (A0A2D0TCJ0) | Pisum sativum | |
| 20 | W, YA (S, s) | Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26 | polymer | 244 | 26541.5 | 2 | Pfam (PF00504) UniProt (by SIFTS) (A0A2D0TCJ1) | Pisum sativum | |
| 21 | X, ZA (T, t) | Photosystem II reaction center protein T | polymer | 35 | 4036.9 | 2 | UniProt (Q8HS25) Pfam (PF01405) | Pisum sativum (Garden pea) | PSII-T |
| 22 | AB, Y (W, w) | Photosystem II reaction center protein W | polymer | 54 | 5914.6 | 2 | Pfam (PF07123) UniProt (by SIFTS) (A0A2D0TCJ2) | Pisum sativum | |
| 23 | BB, Z (X, x) | Photosystem II reaction center protein X | polymer | 86 | 8692.1 | 2 | UniProt (Q8VYY1) Pfam (PF06596) | Pisum sativum (Garden pea) | |
| 24 | BA, DB (Z, z) | Photosystem II reaction center protein Z | polymer | 62 | 6555.7 | 2 | UniProt (Q32902) Pfam (PF01737) | Pisum sativum (Garden pea) | PSII-Z |
| 25 | AH, AI, AK, AN, AS... (G, N, Y, 8, r...) | CHLOROPHYLL B | non-polymer | 907.5 | 98 | Chemie (CHL) | |||
| 26 | AC, AD, AF, AG, AL... (2, 3, B, C, 5...) | CHLOROPHYLL A | non-polymer | 893.5 | 216 | Chemie (CLA) | |||
| 27 | BT, CT, DL, ED, EL... (s, 5, 3, 8, N...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 32 | Chemie (LUT) | |||
| 28 | AJ, FL, GD, GN, II... (R, 5, 3, 8, N...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 16 | Chemie (XAT) | |||
| 29 | BJ, DT, GL, HD, JI... (R, s, 5, 3, N...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 16 | Chemie (NEX) | |||
| 30 | AM, CJ, CQ, CR, DQ... (6, R, d, l, s...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 36 | Chemie (LHG) | |||
| 31 | AQ, AR, BG, CG, DG... (d, h, C, B, t...) | BETA-CAROTENE | non-polymer | 536.9 | 24 | Chemie (BCR) | |||
| 32 | JN, YD (a, A) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 33 | KN, ZD (a, A) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) | |||
| 34 | AE, BE, LN, MN (A, a) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
| 35 | FE, GE, QN, RN (A, a) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 36 | HF, JE, JF, NE, SO... (B, A, b, a) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) | |||
| 37 | FQ, IF, IG, KE, ME... (d, B, C, A, Z...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 14 | Chemie (LMG) | |||
| 38 | BQ, LE, QG, WN (d, A, D, a) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
| 39 | BR, FG, GG, HG, KF... (h, C, B, H, c...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 10 | Chemie (DGD) | |||
| 40 | MG, XP (D, d) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) | |||
| 41 | GQ, VG (f, F) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 42 | AU, AV, BU, BV, CU... (A, e, B, f, C...) | water | water | 18.0 | 1076 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 1094770.1 | |
| Non-Polymers* | Number of molecules | 490 |
| Total formula weight | 393913.4 | |
| All* | Total formula weight | 1488683.5 |
