5XNL
Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AA, B, CA, CB... (1, 2, G, N, Y...) | Chlorophyll a-b binding protein 8, chloroplastic | polymer | 232 | 24952.1 | 10 | UniProt (P27490) | Pisum sativum (Garden pea) | LHCII type I CAB-8 |
| 2 | C, EA (3, 7) | Chlorophyll a-b binding protein, chloroplastic | polymer | 243 | 26545.2 | 2 | UniProt (Q04918) Pfam (PF00504) | Pisum sativum (Garden pea) | |
| 3 | D, FA (4, 8) | Light harvesting chlorophyll a/b-binding protein Lhcb6, CP24 | polymer | 210 | 22859.0 | 2 | UniProt (by SIFTS) (A0A2D0TCJ3) | Pisum sativum | |
| 4 | E, GA (A, a) | Photosystem II protein D1 | polymer | 344 | 38147.4 | 2 | UniProt (P06585) | Pisum sativum (Garden pea) | PSII D1 protein,32 kDa thylakoid membrane protein,Photosystem II Q(B) protein |
| 5 | F, HA (B, b) | Photosystem II CP47 reaction center protein | polymer | 507 | 56117.8 | 2 | UniProt (Q9XQR6) | Pisum sativum (Garden pea) | PSII 47 kDa protein,Protein CP-47 |
| 6 | G, IA (C, c) | Photosystem II CP43 reaction center protein | polymer | 473 | 52035.6 | 2 | UniProt (P06004) | Pisum sativum (Garden pea) | PSII 43 kDa protein,Photosystem II 44 kDa chlorophyll apoprotein,Protein CP-43 |
| 7 | H, JA (D, d) | Photosystem II D2 protein | polymer | 353 | 39557.2 | 2 | UniProt (P06006) | Pisum sativum (Garden pea) | PSII D2 protein,Photosystem Q(A) protein |
| 8 | I, KA (E, e) | Cytochrome b559 subunit alpha | polymer | 83 | 9421.6 | 2 | UniProt (P13554) | Pisum sativum (Garden pea) | PSII reaction center subunit V |
| 9 | J, LA (F, f) | Cytochrome b559 subunit beta, PsbF | polymer | 39 | 4488.3 | 2 | UniProt (by SIFTS) (P62096) | Pisum sativum | |
| 10 | L, NA (H, h) | Photosystem II reaction center protein H | polymer | 73 | 7863.1 | 2 | UniProt (Q9XQR3) | Pisum sativum (Garden pea) | PSII-H,Photosystem II 10 kDa phosphoprotein,Photosystem II 9 kDa phosphoprotein |
| 11 | M, OA (I, i) | Photosystem II reaction center protein I, PsbI | polymer | 36 | 4184.9 | 2 | UniProt (by SIFTS) (D5MAJ9) | Pisum sativum | |
| 12 | N, PA (J, j) | Photosystem II reaction center protein J | polymer | 40 | 4116.8 | 2 | UniProt (P13555) | Pisum sativum (Garden pea) | PSII-J |
| 13 | O, QA (K, k) | Photosystem II reaction center protein K | polymer | 61 | 6912.3 | 2 | UniProt (D5MAJ8) | Pisum sativum (Garden pea) | PSII-K |
| 14 | P, RA (L, l) | Photosystem II reaction center protein L | polymer | 38 | 4498.1 | 2 | UniProt (P60147) | Pisum sativum (Garden pea) | PSII-L |
| 15 | Q, SA (M, m) | Photosystem II reaction center protein M | polymer | 34 | 3756.5 | 2 | UniProt (P69529) | Pisum sativum (Garden pea) | PSII-M |
| 16 | S, UA (O, o) | Oxygen-evolving enhancer protein 1, chloroplastic | polymer | 248 | 26554.6 | 2 | UniProt (P14226) | Pisum sativum (Garden pea) | OEE1,33 kDa subunit of oxygen evolving system of photosystem II,33 kDa thylakoid membrane protein,OEC 33 kDa subunit |
| 17 | T, VA (P, p) | Oxygen-evolving enhancer protein 2, chloroplastic | polymer | 186 | 20287.5 | 2 | UniProt (P16059) | Pisum sativum (Garden pea) | OEE2,23 kDa subunit of oxygen evolving system of photosystem II,23 kDa thylakoid membrane protein,OEC 23 kDa subunit |
| 18 | U, WA (Q, q) | Oxygen-evolving enhancer protein 3 | polymer | 148 | 16398.9 | 2 | UniProt (Q7Y1T5) Pfam (PF05757) | Pisum sativum (Garden pea) | |
| 19 | V, XA (R, r) | Light harvesting chlorophyll a/b-binding protein Lhcb4, CP29 | polymer | 246 | 27138.7 | 2 | UniProt (by SIFTS) (A0A2D0TCJ0) | Pisum sativum | |
| 20 | W, YA (S, s) | Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26 | polymer | 244 | 26541.5 | 2 | UniProt (by SIFTS) (A0A2D0TCJ1) | Pisum sativum | |
| 21 | X, ZA (T, t) | Photosystem II reaction center protein T | polymer | 35 | 4036.9 | 2 | UniProt (Q8HS25) | Pisum sativum (Garden pea) | PSII-T |
| 22 | AB, Y (W, w) | Photosystem II reaction center protein W | polymer | 54 | 5914.6 | 2 | UniProt (by SIFTS) (A0A2D0TCJ2) | Pisum sativum | |
| 23 | BB, Z (X, x) | Photosystem II reaction center protein X | polymer | 86 | 8692.1 | 2 | UniProt (Q8VYY1) | Pisum sativum (Garden pea) | |
| 24 | BA, DB (Z, z) | Photosystem II reaction center protein Z | polymer | 62 | 6555.7 | 2 | UniProt (Q32902) | Pisum sativum (Garden pea) | PSII-Z |
| 25 | AH, AI, AK, AN, AS... (G, N, Y, 8, r...) | CHLOROPHYLL B | non-polymer | 907.5 | 98 | Chemie (CHL) | |||
| 26 | AC, AD, AF, AG, AL... (2, 3, B, C, 5...) | CHLOROPHYLL A | non-polymer | 893.5 | 216 | Chemie (CLA) | |||
| 27 | BT, CT, DL, ED, EL... (s, 5, 3, 8, N...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 32 | Chemie (LUT) PubChem (24728610) PubChem (177565809) PubChem (25202165) PubChem (177696530) PubChem (44481270) PubChem (46835684) PubChem (25245095) PubChem (53477744) PubChem (53477774) PubChem (181579) PubChem (441664) PubChem (53477760) PubChem (57922343) PubChem (31380) PubChem (90820720) PubChem (448437) PubChem (89305995) PubChem (91240120) PubChem (91519940) PubChem (91007743) PubChem (91330154) PubChem (91467158) PubChem (5281243) PubChem (93535598) PubChem (94424894) PubChem (100935514) PubChem (101351907) PubChem (101351906) PubChem (5368396) PubChem (6325550) PubChem (6433159) PubChem (93971688) PubChem (93971689) PubChem (93971690) PubChem (93971691) PubChem (94424892) PubChem (94424893) PubChem (131801656) PubChem (101351905) PubChem (101351908) PubChem (101351909) PubChem (101351910) PubChem (101727094) PubChem (102093134) PubChem (102514741) PubChem (12085680) PubChem (10210008) PubChem (10257404) PubChem (139335388) PubChem (12359017) PubChem (16061195) PubChem (16061196) PubChem (16061204) PubChem (162679657) PubChem (162945700) PubChem (162945708) PubChem (125183271) PubChem (125183272) PubChem (125183273) PubChem (125183613) PubChem (125183614) PubChem (126970006) PubChem (175679236) PubChem (175679086) PubChem (131801655) PubChem (139595700) PubChem (152743345) PubChem (156583347) PubChem (159139983) PubChem (162945701) PubChem (162945702) PubChem (162945703) PubChem (162945704) PubChem (162945705) PubChem (162945706) PubChem (162945707) PubChem (162945709) PubChem (169423521) PubChem (169954357) PubChem (172748694) | |||
| 28 | AJ, FL, GD, GN, II... (R, 5, 3, 8, N...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 16 | Chemie (XAT) PubChem (24970201) PubChem (46936684) PubChem (53477762) PubChem (179930) PubChem (51346155) PubChem (448438) PubChem (92096) PubChem (5282218) PubChem (5315242) PubChem (98049827) PubChem (101341889) PubChem (101341891) PubChem (6852159) PubChem (126456015) PubChem (6384269) PubChem (6442428) PubChem (98049828) PubChem (101341888) PubChem (101341890) PubChem (101341892) PubChem (101341893) PubChem (101341894) PubChem (101341895) PubChem (9851662) PubChem (12358664) PubChem (12358665) PubChem (12358669) PubChem (155293357) PubChem (162964874) PubChem (163187351) PubChem (125183415) PubChem (125183416) PubChem (125183417) PubChem (177696491) PubChem (129888894) PubChem (137331554) PubChem (152743429) PubChem (162964869) PubChem (162964870) PubChem (162964871) PubChem (162964872) PubChem (162964873) PubChem (162964875) PubChem (162964876) PubChem (163186889) PubChem (169544055) PubChem (171036315) PubChem (172817291) | |||
| 29 | BJ, DT, GL, HD, JI... (R, s, 5, 3, N...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 16 | Chemie (NEX) PubChem (177697037) PubChem (21158515) PubChem (52948899) PubChem (4481261) PubChem (5282217) PubChem (159749) PubChem (5320120) PubChem (5281247) PubChem (101866355) PubChem (6384259) PubChem (101052392) PubChem (101866356) PubChem (101866357) PubChem (102060371) PubChem (10908146) PubChem (12358959) PubChem (162910894) PubChem (162910891) PubChem (162910895) PubChem (139033583) PubChem (162910892) PubChem (162910893) PubChem (162910896) PubChem (169502056) PubChem (172012198) | |||
| 30 | AM, CJ, CQ, CR, DQ... (6, R, d, l, s...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 36 | Chemie (LHG) PubChem (46936292) PubChem (446440) PubChem (73416066) PubChem (65144) PubChem (9547104) PubChem (13305396) PubChem (11846227) PubChem (138986743) | |||
| 31 | AQ, AR, BG, CG, DG... (d, h, C, B, t...) | BETA-CAROTENE | non-polymer | 536.9 | 24 | Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (86765360) PubChem (5315709) PubChem (5280489) PubChem (91827292) PubChem (92863345) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (124919640) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (6477957) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (146673260) PubChem (152743364) PubChem (124919639) PubChem (160505766) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 32 | JN, YD (a, A) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 33 | KN, ZD (a, A) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 34 | AE, BE, LN, MN (A, a) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) PubChem (312) | |||
| 35 | FE, GE, QN, RN (A, a) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 36 | HF, JE, JF, NE, SO... (B, A, b, a) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (5459390) PubChem (102201395) PubChem (134765349) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 37 | FQ, IF, IG, KE, ME... (d, B, C, A, Z...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 14 | Chemie (LMG) | |||
| 38 | BQ, LE, QG, WN (d, A, D, a) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) PubChem (23304240) PubChem (20286) PubChem (21881166) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) | |||
| 39 | BR, FG, GG, HG, KF... (h, C, B, H, c...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 10 | Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (448441) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 40 | MG, XP (D, d) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 41 | GQ, VG (f, F) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 42 | AU, AV, BU, BV, CU... (A, e, B, f, C...) | water | water | 18.0 | 1076 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 1094770.1 | |
| Non-Polymers* | Number of molecules | 490 |
| Total formula weight | 393913.4 | |
| All* | Total formula weight | 1488683.5 |
