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5XLF

Crystal structure of aerobically purified and aerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(S)
Periplasmic [NiFe] hydrogenase small subunitpolymer26728789.71UniProt (P21853)Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)NiFe hydrogenlyase small chain
2B
(L)
Periplasmic [NiFe] hydrogenase large subunitpolymer55260978.51UniProt (P21852)Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)NiFe hydrogenlyase large chain
3C, D
(S)
IRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
4E
(S)
FE3-S4 CLUSTERnon-polymer295.81Chemie (F3S)
5F, I
(S, L)
(4S)-2-METHYL-2,4-PENTANEDIOLnon-polymer118.22Chemie (MPD)
6G
(L)
NI-FE OXIDIZED ACTIVE CENTERnon-polymer210.61Chemie (NFV)
7H
(L)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
8J, K
(S, L)
waterwater18.0792Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight89768.2
Non-Polymers*Number of molecules7
Total formula weight1470.3
All*Total formula weight91238.5
*Water molecules are not included.

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PDB entries from 2026-01-21

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