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5XF9

Crystal structure of NAD+-reducing [NiFe]-hydrogenase in the air-oxidized state

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
NAD-reducing hydrogenasepolymer59164214.82UniProt (A0A077L6X8)
Pfam (PF01257)
Pfam (PF01512)
Pfam (PF10589)
Hydrogenophilus thermoluteolus
2B, F
(B, F)
NAD-reducing hydrogenasepolymer24226223.12UniProt (A0A077L885)
Pfam (PF13510)
Pfam (PF10588)
Pfam (PF13459)
Hydrogenophilus thermoluteolus
3C, G
(C, G)
NAD-reducing hydrogenasepolymer18920987.22UniProt (A0A077L7R5)
Pfam (PF01058)
Hydrogenophilus thermoluteolus
4D, H
(D, H)
NAD-reducing hydrogenasepolymer46851926.22UniProt (A0A077LAI5)
Pfam (PF00374)
Hydrogenophilus thermoluteolus
5I, R
(A, E)
FLAVIN MONONUCLEOTIDEnon-polymer456.32Chemie (FMN)
PubChem (710)
PubChem (23585816)
PubChem (8965)
PubChem (51435500)
PubChem (51435503)
PubChem (643976)
PubChem (5702760)
PubChem (7048779)
PubChem (7048781)
PubChem (15559251)
6J, K, L, N, S...
(A, B, C, E, F...)
IRON/SULFUR CLUSTERnon-polymer351.68Chemie (SF4)
7M, V
(B, F)
FE2/S2 (INORGANIC) CLUSTERnon-polymer175.82Chemie (FES)
8O, X
(D, H)
CARBONMONOXIDE-(DICYANO) IRONnon-polymer135.92Chemie (FCO)
9P, Y
(D, H)
NICKEL (III) IONnon-polymer58.72Chemie (3NI)
PubChem (115291)
10Q, Z
(D, H)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
PubChem (888)
11AA, BA, CA, DA, EA...
(A, B, C, D, E...)
waterwater18.0768Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight326702.5
Non-Polymers*Number of molecules18
Total formula weight4515.2
All*Total formula weight331217.7
*Water molecules are not included.

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PDB entries from 2026-05-06

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