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5XF5

Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,S-configuration)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.1polymer13615437.22UniProt (P68431)
Pfam (PF00125)
Homo sapiens (Human)Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l
2B, F
(B, F)
Histone H4polymer10311394.42UniProt (P62805)
Pfam (PF15511)
Homo sapiens (Human)
3C, G
(C, G)
Histone H2A type 1-B/Epolymer13014165.62UniProt (P04908)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (Human)Histone H2A.2,Histone H2A/a,Histone H2A/m
4D, H
(D, H)
Histone H2B type 1-Jpolymer12613935.22UniProt (P06899)
Pfam (PF00125)
Homo sapiens (Human)Histone H2B.1,Histone H2B.r,H2B/r
5I
(I)
DNA (145-MER)polymer14544749.71Homo sapiens
6J
(J)
DNA (145-MER)polymer14544740.61Homo sapiens
7K
(E)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
8L, N
(G)
[ethane6-3-(p-tolyl)propanoic acid]Ru(1,3,5-triaza-7-phosphaadamantane)Cl2non-polymer493.32Chemie (RUD)
9M
(G)
(1S,2R)-1,2-diphenylethane-1,2-diaminenon-polymer212.31Chemie (RSK)
10O
(H)
SULFATE IONnon-polymer96.11Chemie (SO4)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight199355.1
Non-Polymers*Number of molecules5
Total formula weight1319.3
All*Total formula weight200674.4
*Water molecules are not included.

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PDB entries from 2024-10-30

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