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5X0I

Crystal structure of PKM2 R399E mutant complexed with FBP and serine

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, DPyruvate kinase PKMpolymer55160160.24UniProt (P14618)
Pfam (PF00224)
Pfam (PF02887)
In PDB
Homo sapiens (Human)Cytosolic thyroid hormone-binding protein,CTHBP,Opa-interacting protein 3,OIP-3,Pyruvate kinase 2/3,Pyruvate kinase muscle isozyme,Thyroid hormone-binding protein 1,THBP1,Tumor M2-PK,p58
2A, B, C, D1,6-di-O-phosphono-beta-D-fructofuranosenon-polymer340.14Chemie (FBP)
3A, B, C, DSERINEnon-polymer105.14Chemie (SER)
4A, B, C, DPYRUVIC ACIDnon-polymer88.14Chemie (PYR)
5A, B, C, DMAGNESIUM IONnon-polymer24.34Chemie (MG)
6A, B, C, DPOTASSIUM IONnon-polymer39.14Chemie (K)
7waterwater18.045Chemie (HOH)
Sequence modifications
A, B, C, D: 1 - 531 (UniProt: P14618)
PDBExternal DatabaseDetails
Met -19-expression tag
Gly -18-expression tag
Ser -17-expression tag
Ser -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
Ser -9-expression tag
Ser -8-expression tag
Gly -7-expression tag
Leu -6-expression tag
Val -5-expression tag
Pro -4-expression tag
Arg -3-expression tag
Gly -2-expression tag
Ser -1-expression tag
His 0-expression tag
Glu 399Arg 399engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight240640.7
Non-Polymers*Number of molecules20
Total formula weight2386.7
All*Total formula weight243027.4
*Water molecules are not included.

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PDB entries from 2024-05-15

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