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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5WLC

The complete structure of the small subunit processome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(L0)		5' ETSpolymer700225543.11GenBank (1262303)Saccharomyces cerevisiae BY4741 (Baker's yeast)
2B
(L1)		18S pre-rRNApolymer1807582052.41GenBank (874346701)Saccharomyces cerevisiae BY4741 (Baker's yeast)
3C
(L2)		U3 snoRNApolymer333106503.31GenBank (176452)Saccharomyces cerevisiae BY4741 (Baker's yeast)
4D
(L3)		rpS18_uS13polymer14616773.31UniProt (P0CX55)
Pfam (PF00416)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
5E
(L4)		rpS4_eS4polymer26129469.31UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
6F
(L5)		rpS5_uS7polymer22525072.61UniProt (A0A1L4AA68)
Pfam (PF00177)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
7G
(L6)		rpS6_eS6polymer23627054.51UniProt (P0CX37)
Pfam (PF01092)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
8H
(L7)		rpS7_eS7polymer19021658.21UniProt (P26786)
Pfam (PF01251)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
9I
(L8)		rpS8_eS8polymer20022537.81UniProt (P0CX39)
Pfam (PF01201)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
10J
(L9)		rpS9_uS4polymer19722487.91UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
11K
(LC)		rpS16_uS9polymer14315877.51UniProt (P0CX51)
Pfam (PF00380)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
12L
(LD)		rpS11_uS17polymer15617785.91UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
13M
(LE)		rpS22_uS8polymer13014650.11UniProt (P0C0W1)
Pfam (PF00410)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
14N
(LF)		rpS24_eS24polymer13515362.81UniProt (P0CX31)
Pfam (PF01282)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
15O
(LG)		rpS28_eS28polymer677605.81UniProt (Q3E7X9)
Pfam (PF01200)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
16P
(LH)		Utp17polymer896100960.41UniProt (Q02931)
Pfam (PF00400)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
17Q
(LI)		Utp8polymer71365573.01UniProt (P53276)
Pfam (PF22542)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
18R
(LJ)		Utp15polymer51357765.31UniProt (Q04305)
Pfam (PF00400)
Pfam (PF09384)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
19S
(LK)		Utp9polymer57564378.51UniProt (P38882)Saccharomyces cerevisiae BY4741 (Baker's yeast)
20T
(LL)		Utp5polymer64372079.41UniProt (Q04177)
Pfam (PF04003)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
21U
(LM)		Utp10polymer1769200020.71UniProt (P42945)
Pfam (PF12397)
Pfam (PF08146)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
22V
(LN)		Utp4polymer77687316.51UniProt (Q06679)
Pfam (PF00400)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
23W
(LO)		Utp1polymer923104097.01UniProt (P25635)
Pfam (PF00400)
Pfam (PF04003)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
24X
(LP)		Utp6polymer44048437.41UniProt (Q02354)
Pfam (PF08640)
Pfam (PF05843)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
25Y
(LQ)		Utp12polymer943105037.61UniProt (Q12220)
Pfam (PF00400)
Pfam (PF04003)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
26Z
(LR)		Utp13polymer81775035.91UniProt (Q05946)
Pfam (PF08625)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
27AA
(LS)		Utp18polymer59466494.31UniProt (P40362)
Pfam (PF00400)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
28BA
(LT)		Utp21polymer939104927.81UniProt (Q06078)
Pfam (PF00400)
Pfam (PF04192)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
29CA
(LU)		Sof1polymer48956888.91UniProt (P33750)
Pfam (PF00400)
Pfam (PF04158)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
30DA
(LV)		Enp2polymer70781864.21UniProt (P48234)
Pfam (PF08159)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
31EA
(LW)		Utp7polymer55462418.61UniProt (P40055)
Pfam (PF00400)
Pfam (PF08149)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
32FA, GA
(LX, LY)		Kre33polymer105695337.12UniProt (P53914)
Pfam (PF08351)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
33HA
(LZ)		Imp3polymer18321928.51UniProt (P32899)
Pfam (PF00163)
Pfam (PF01479)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
34IA
(NA)		Mpp10polymer59367042.51UniProt (P47083)
Pfam (PF04006)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
35JA
(NB)		Sas10polymer61069705.71UniProt (Q12136)
Pfam (PF04000)
Pfam (PF09368)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
36KA
(NC)		Lcp5polymer35740864.41UniProt (P40079)
Pfam (PF04000)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
37LA
(ND)		Bud21polymer21423835.61UniProt (Q08492)
Pfam (PF08297)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
38MA
(NE)		Faf1polymer34638173.71UniProt (P40546)Saccharomyces cerevisiae BY4741 (Baker's yeast)
39NA
(NF)		rpS13_uS15polymer15117059.91UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
40OA
(NG)		rpS14_uS11polymer13714562.71UniProt (P06367)
Pfam (PF00411)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
41PA
(NH)		Utp22polymer1237140660.11UniProt (P53254)
Pfam (PF03813)
Pfam (PF17403)
Pfam (PF17404)
Pfam (PF17405)
Pfam (PF17406)
Pfam (PF17407)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
42QA
(NI)		Rrp7polymer29734526.41UniProt (P25368)
Pfam (PF17799)
Pfam (PF12923)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
43RA
(NJ)		Rrp5polymer1729193411.41UniProt (Q05022)
Pfam (PF00575)
Pfam (PF05843)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
44SA
(NK)		Krr1polymer31637226.31UniProt (B3LU25)
Pfam (PF17903)
Pfam (PF21800)
UniProt (by SIFTS) (P25586)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
45TA
(SA)		Nop56polymer50456394.91UniProt (Q12460)
Pfam (PF08156)
Pfam (PF01798)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
46UA
(SB)		Nop58polymer51153814.51UniProt (Q12499)
Pfam (PF01798)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
47VA, WA
(SC, SD)		Nop1polymer32734525.42UniProt (P15646)
Pfam (PF01269)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
48XA, YA
(SE, SF)		Snu13polymer12613582.92UniProt (P39990)
Pfam (PF01248)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
49ZA
(SG)		Rrp9polymer57365147.01UniProt (Q06506)
Pfam (PF00400)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
50AB
(SH)		Rcl1polymer36740220.61UniProt (Q08096)
Pfam (PF01137)
Pfam (PF05189)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
51BB
(SI)		Bms1polymer1184135152.91UniProt (Q08965)
Pfam (PF00004)
Pfam (PF08142)
Pfam (PF04950)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
52CB, DB
(SJ, SK)		Emg1polymer25227936.52UniProt (Q06287)
Pfam (PF03587)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
53EB
(SL)		Utp24polymer18921650.71UniProt (Q05498)
Pfam (PF04900)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
54FB
(SM)		Imp4polymer29033536.21UniProt (P53941)
Pfam (PF04427)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
55GB
(SN)		Utp30polymer27431668.91UniProt (P36144)
Pfam (PF00687)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
56HB
(SO)		Pno1polymer27430380.61UniProt (Q99216)
Pfam (PF17903)
Pfam (PF22891)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
57IB
(SP)		Utp20polymer98283590.21Saccharomyces cerevisiae BY4741 (Baker's yeast)
58JB
(SQ)		Fcf2polymer21725689.21UniProt (Q12035)
Pfam (PF08698)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
59KB
(SR)		rpS23_uS12polymer14516073.91UniProt (P0CY39)
Pfam (PF00164)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
60LB
(SS)		Utp14polymer898101101.51UniProt (Q04500)
Pfam (PF04615)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
61MB
(ST)		Nop14polymer79285994.01UniProt (Q99207)
Pfam (PF04147)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
62NB
(SU)		Noc4polymer55258369.11UniProt (Q06512)
Pfam (PF03914)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
63OB
(SV)		Rrt14polymer20621036.91UniProt (B5VKI1)
UniProt (E9P9B2)
Pfam (PF17075)
UniProt (by SIFTS) (P40470)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
64PB
(SX)		Unassigned peptidespolymer1038783.81Saccharomyces cerevisiae BY4741 (Baker's yeast)
65QB
(SY)		Utp11polymer25029806.31UniProt (B5VM59)
Pfam (PF03998)
UniProt (by SIFTS) (P34247)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
66RB
(SZ)		Enp1polymer48355207.41UniProt (P38333)
Pfam (PF05291)		Saccharomyces cerevisiae BY4741 (Baker's yeast)
67SB
(SL)		ZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
L2: 1 - 333 (GenBank: 176452)
PDBExternal DatabaseDetails
C 200G 200conflict
L3: 1 - 120 (UniProt: P0CX55)
L3: 121 - 128 (PDB: 5WLC)
L3: 129 - 146 (UniProt: P0CX55)
LH: 1 - 817 (UniProt: Q02931)
LH: 818 - 831 (PDB: 5WLC)
LH: 832 - 896 (UniProt: Q02931)
LI: -167 - 548 (PDB: 5WLC)
LI: 549 - 723 (UniProt: P53276)
LK: -1 - 390 (UniProt: P38882)
LK: 391 - 426 (PDB: 5WLC)
LK: 428 - 575 (UniProt: P38882)
LM: 1 - 426 (UniProt: P42945)
LM: 427 - 432 (PDB: 5WLC)
LM: 433 - 1769 (UniProt: P42945)
LN: 1 - 666 (UniProt: Q06679)
LN: 667 - 689 (PDB: 5WLC)
LN: 689 - 776 (UniProt: Q06679)
LP: 1 - 326 (UniProt: Q02354)
LP: 327 - 450 (PDB: 5WLC)
LQ: 1 - 287 (UniProt: Q12220)
LQ: 288 - 317 (PDB: 5WLC)
LQ: 321 - 775 (UniProt: Q12220)
LQ: 776 - 786 (PDB: 5WLC)
LQ: 787 - 943 (UniProt: Q12220)
LR: -72 - 615 (PDB: 5WLC)
LR: 649 - 817 (UniProt: Q05946)
LX, LY: 1 - 154 (UniProt: P53914)
LX, LY: 155 - 179 (PDB: 5WLC)
LX, LY: 180 - 208 (UniProt: P53914)
LX, LY: 209 - 1171 (PDB: 5WLC)
NB: 1 - 441 (UniProt: Q12136)
NB: 442 - 454 (PDB: 5WLC)
NB: 455 - 610 (UniProt: Q12136)
ND: 1 - 100 (UniProt: Q08492)
ND: 101 - 122 (PDB: 5WLC)
ND: 122 - 214 (UniProt: Q08492)
NE: 0 - 90 (UniProt: P40546)
NE: 91 - 119 (PDB: 5WLC)
NE: 119 - 346 (UniProt: P40546)
SA: 1 - 227 (UniProt: Q12460)
SA: 231 - 259 (PDB: 5WLC)
SA: 259 - 447 (UniProt: Q12460)
SA: 448 - 504 (UniProt: Q12460)
SB: -7 - 125 (PDB: 5WLC)
SB: 133 - 511 (UniProt: Q12499)
SI: 1 - 376 (UniProt: Q08965)
SI: 376 - 417 (PDB: 5WLC)
SI: 419 - 1183 (UniProt: Q08965)
SS: 1 - 350 (UniProt: Q04500)
SS: 351 - 408 (PDB: 5WLC)
SS: 408 - 899 (UniProt: Q04500)
ST: 1 - 119 (UniProt: Q99207)
ST: 119 - 418 (PDB: 5WLC)
ST: 419 - 810 (UniProt: Q99207)
SU: -7 - 147 (PDB: 5WLC)
SU: 148 - 513 (UniProt: Q06512)
SU: 514 - 552 (PDB: 5WLC)
SV: -28 - 71 (UniProt: B5VKI1)
SV: 72 - 148 (PDB: 5WLC)
SV: 178 - 206 (UniProt: E9P9B2)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains70
Total formula weight4499109.7
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight4499175.2
*Water molecules are not included.

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PDB entries from 2025-10-29

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