5WFS
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 23S rRNA | polymer | 2903 | 941548.4 | 1 | GenBank (216643) | Escherichia coli | |
| 2 | B (B) | 5S rRNA | polymer | 120 | 38813.1 | 1 | GenBank (1199817771) | Escherichia coli | |
| 3 | C (C) | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 1 | UniProt (B7MCT2) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60422) | Escherichia coli | |
| 4 | D (D) | 50S ribosomal protein L3 | polymer | 208 | 22146.3 | 1 | UniProt (B7MCT5) Pfam (PF00297) UniProt (by SIFTS) (P60438) | Escherichia coli | |
| 5 | E (E) | 50S ribosomal protein L4 | polymer | 200 | 21990.4 | 1 | UniProt (B7MCT4) Pfam (PF00573) UniProt (by SIFTS) (P60723) | Escherichia coli | |
| 6 | F (F) | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (B7MCS3) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P62399) | Escherichia coli | |
| 7 | G (G) | 50S ribosomal protein L6 | polymer | 174 | 18543.2 | 1 | UniProt (B7MCS0) Pfam (PF00347) UniProt (by SIFTS) (P0AG55) | Escherichia coli | |
| 8 | H (H) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (B7MLK8) Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (P0A7R1) | Escherichia coli | |
| 9 | I (I) | 50S ribosomal protein L11 | polymer | 141 | 14763.2 | 1 | UniProt (B7MIW9) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (P0A7J7) | Escherichia coli | |
| 10 | J (J) | 50S ribosomal protein L13 | polymer | 141 | 15937.4 | 1 | UniProt (B7MBZ2) Pfam (PF00572) UniProt (by SIFTS) (P0AA10) | Escherichia coli | |
| 11 | K (K) | 50S ribosomal protein L14 | polymer | 122 | 13451.9 | 1 | UniProt (B7MCS5) Pfam (PF00238) UniProt (by SIFTS) (P0ADY3) | Escherichia coli | |
| 12 | L (L) | 50S ribosomal protein L15 | polymer | 143 | 14879.4 | 1 | UniProt (A8A5A6) Pfam (PF00828) UniProt (by SIFTS) (P02413) | Escherichia coli | |
| 13 | M (M) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (B7MCS8) Pfam (PF00252) UniProt (by SIFTS) (P0ADY7) | Escherichia coli | |
| 14 | N (N) | 50S ribosomal protein L17 | polymer | 119 | 13592.8 | 1 | UniProt (B7MCR0) Pfam (PF01196) UniProt (by SIFTS) (P0AG44) | Escherichia coli | |
| 15 | O (O) | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 1 | UniProt (B7MCR9) Pfam (PF00861) UniProt (by SIFTS) (P0C018) | Escherichia coli | |
| 16 | P (P) | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (B7MIU4) Pfam (PF01245) UniProt (by SIFTS) (P0A7K6) | Escherichia coli | |
| 17 | Q (Q) | 50S ribosomal protein L20 | polymer | 115 | 13212.6 | 1 | UniProt (B7MAS6) Pfam (PF00453) UniProt (by SIFTS) (P0A7L3) | Escherichia coli | |
| 18 | R (R) | 50S ribosomal protein L21 | polymer | 102 | 11515.3 | 1 | UniProt (B7MBV5) Pfam (PF00829) UniProt (by SIFTS) (P0AG48) | Escherichia coli | |
| 19 | S (S) | 50S ribosomal protein L22 | polymer | 109 | 12096.2 | 1 | UniProt (B7MCT0) Pfam (PF00237) UniProt (by SIFTS) (P61175) | Escherichia coli | |
| 20 | T (T) | 50S ribosomal protein L23 | polymer | 92 | 10415.3 | 1 | UniProt (P0ADZ2) Pfam (PF00276) UniProt (by SIFTS) (P0ADZ0) | Escherichia coli | |
| 21 | U (U) | 50S ribosomal protein L24 | polymer | 102 | 11078.9 | 1 | UniProt (B7L4J5) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (P60624) | Escherichia coli | |
| 22 | V (V) | 50S ribosomal protein L25 | polymer | 92 | 10511.2 | 1 | UniProt (B7LAK9) Pfam (PF01386) UniProt (by SIFTS) (P68919) | Escherichia coli | |
| 23 | W (W) | 50S ribosomal protein L27 | polymer | 75 | 8146.4 | 1 | UniProt (B7MBV4) Pfam (PF01016) UniProt (by SIFTS) (P0A7L8) | Escherichia coli | |
| 24 | X (X) | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (B7MFJ8) Pfam (PF00830) UniProt (by SIFTS) (P0A7M2) | Escherichia coli | |
| 25 | Y (Y) | 50S ribosomal protein L29 | polymer | 60 | 7087.3 | 1 | UniProt (B7MCS7) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6) | Escherichia coli | |
| 26 | Z (Z) | 50S ribosomal protein L30 | polymer | 56 | 6223.4 | 1 | UniProt (B7MCR7) Pfam (PF00327) UniProt (by SIFTS) (P0AG51) | Escherichia coli | |
| 27 | AA (0) | 50S ribosomal protein L32 | polymer | 55 | 6203.1 | 1 | UniProt (B7MJ76) Pfam (PF01783) UniProt (by SIFTS) (P0A7N4) | Escherichia coli | |
| 28 | BA (1) | 50S ribosomal protein L33 | polymer | 51 | 5928.0 | 1 | UniProt (B7MFJ7) Pfam (PF00471) UniProt (by SIFTS) (P0A7N9) | Escherichia coli | |
| 29 | CA (2) | 50S ribosomal protein L34 | polymer | 45 | 5268.3 | 1 | UniProt (B7MGC4) Pfam (PF00468) UniProt (by SIFTS) (P0A7P5) | Escherichia coli | |
| 30 | DA (3) | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (B7MAS7) Pfam (PF01632) UniProt (by SIFTS) (P0A7Q1) | Escherichia coli | |
| 31 | EA (4) | 50S ribosomal protein L36 1 | polymer | 38 | 4377.4 | 1 | UniProt (A8A5A4) Pfam (PF00444) UniProt (by SIFTS) (P0A7Q6) | Escherichia coli | |
| 32 | FA (5) | 50S ribosomal protein L10 | polymer | 131 | 14112.3 | 1 | UniProt (B7MIX1) Pfam (PF00466) UniProt (by SIFTS) (P0A7J3) | Escherichia coli | |
| 33 | GA (6) | 50S ribosomal protein L31 | polymer | 66 | 7516.7 | 1 | UniProt (B7MI68) Pfam (PF01197) UniProt (by SIFTS) (P0A7M9) | Escherichia coli | |
| 34 | HA (a) | 16S rRNA | polymer | 1540 | 499239.0 | 1 | GenBank (1114191980) | Escherichia coli | |
| 35 | IA (b) | 30S ribosomal protein S2 | polymer | 218 | 24253.9 | 1 | UniProt (B7MBF0) Pfam (PF00318) UniProt (by SIFTS) (P0A7V0) | Escherichia coli | |
| 36 | JA (c) | 30S ribosomal protein S3 | polymer | 206 | 23078.8 | 1 | UniProt (B7MCS9) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P0A7V3) | Escherichia coli | |
| 37 | KA (d) | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (B7MCR2) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P0A7V8) | Escherichia coli | |
| 38 | LA (e) | 30S ribosomal protein S5 | polymer | 157 | 16532.1 | 1 | UniProt (P0A7W3) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (P0A7W1) | Escherichia coli | |
| 39 | MA (f) | 30S ribosomal protein S6 | polymer | 100 | 11669.4 | 1 | UniProt (B7NGD4) Pfam (PF01250) UniProt (by SIFTS) (P02358) | Escherichia coli | |
| 40 | NA (g) | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (B7MCV6) Pfam (PF00177) UniProt (by SIFTS) (P02359) | Escherichia coli | |
| 41 | OA (h) | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (B7MCS1) Pfam (PF00410) UniProt (by SIFTS) (P0A7W7) | Escherichia coli | |
| 42 | PA (i) | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 1 | UniProt (B7MBZ1) Pfam (PF00380) UniProt (by SIFTS) (P0A7X3) | Escherichia coli | |
| 43 | QA (j) | 30S ribosomal protein S10 | polymer | 98 | 11197.0 | 1 | UniProt (B7MCT6) Pfam (PF00338) UniProt (by SIFTS) (P0A7R5) | Escherichia coli | |
| 44 | RA (k) | 30S ribosomal protein S11 | polymer | 116 | 12388.1 | 1 | UniProt (B7MCR3) Pfam (PF00411) UniProt (by SIFTS) (P0A7R9) | Escherichia coli | |
| 45 | SA (l) | 30S ribosomal protein S12 | polymer | 121 | 13436.7 | 1 | UniProt (B7MCV7) Pfam (PF00164) UniProt (by SIFTS) (P0A7S3) | Escherichia coli | |
| 46 | TA (m) | 30S ribosomal protein S13 | polymer | 115 | 12738.9 | 1 | UniProt (P0A7T1) Pfam (PF00416) UniProt (by SIFTS) (P0A7S9) | Escherichia coli | |
| 47 | UA (n) | 30S ribosomal protein S14 | polymer | 101 | 11546.4 | 1 | UniProt (B7MCS2) Pfam (PF00253) UniProt (by SIFTS) (P0AG59) | Escherichia coli | |
| 48 | VA (o) | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (B7MB86) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4) | Escherichia coli | |
| 49 | WA (p) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (B7MIU7) Pfam (PF00886) UniProt (by SIFTS) (P0A7T3) | Escherichia coli | |
| 50 | XA (q) | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (B7MCS6) Pfam (PF00366) UniProt (by SIFTS) (P0AG63) | Escherichia coli | |
| 51 | YA (r) | 30S ribosomal protein S18 | polymer | 65 | 7606.8 | 1 | UniProt (B7MLK7) Pfam (PF01084) UniProt (by SIFTS) (P0A7T7) | Escherichia coli | |
| 52 | ZA (s) | 30S ribosomal protein S19 | polymer | 79 | 9057.6 | 1 | UniProt (B7MCT1) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) | Escherichia coli | |
| 53 | AB (t) | 30S ribosomal protein S20 | polymer | 85 | 9506.2 | 1 | UniProt (B7MAE3) Pfam (PF01649) UniProt (by SIFTS) (P0A7U7) | Escherichia coli | |
| 54 | BB (u) | 30S ribosomal protein S21 | polymer | 65 | 7763.1 | 1 | UniProt (A8A4M2) Pfam (PF01165) UniProt (by SIFTS) (P68679) | Escherichia coli | |
| 55 | CB, DB (v, w) | tRNA-fMet | polymer | 77 | 24818.9 | 2 | GenBank (817573384) | Escherichia coli | |
| 56 | EB (x) | mRNA | polymer | 12 | 3772.3 | 1 | Escherichia coli | ||
| 57 | FB (y) | Phe-tRNA-Phe | polymer | 76 | 24649.9 | 1 | Escherichia coli | ||
| 58 | GB (z) | Elongation factor Tu 2 | polymer | 393 | 43171.2 | 1 | UniProt (A7ZUJ2) Pfam (PF00009) Pfam (PF03144) Pfam (PF03143) UniProt (by SIFTS) (P0CE48) | Escherichia coli | EF-Tu 2 |
| 59 | HB (A) | N-FORMYLMETHIONINE | non-polymer | 177.2 | 1 | Chemie (FME) | |||
| 60 | AAA, AAB, ABA, ABB, AC... (A, a, y, B, M...) | MAGNESIUM ION | non-polymer | 24.3 | 1471 | Chemie (MG) | |||
| 61 | COA, DOA, EOA, FOA, GOA... (A, a) | POTASSIUM ION | non-polymer | 39.1 | 7 | Chemie (K) | |||
| 62 | CGB (z) | PHENYLALANINE | non-polymer | 165.2 | 1 | Chemie (PHE) | |||
| 63 | DGB (z) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 64 | AHB, BHB, CHB, DHB, EHB... (c, i, j, l, m...) | water | water | 18.0 | 1175 | Chemie (HOH) |
Sequence modifications
A: 1 - 2903 (GenBank: 216643)
B: 1 - 120 (GenBank: 1199817771)
n: 1 - 101 (UniProt: B7MCS2)
z: 1 - 393 (UniProt: A7ZUJ2)
| PDB | External Database | Details |
|---|---|---|
| 5mc 747 | U 2062 | conflict |
| G 1723 | A 3038 | conflict |
| G 1847 | A 3162 | conflict |
| PDB | External Database | Details |
|---|---|---|
| A 120 | U 306745 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 35 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Ala 84 | His 85 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 2260657.1 | |
| Non-Polymers* | Number of molecules | 1481 |
| Total formula weight | 36891.9 | |
| All* | Total formula weight | 2297549.0 |
