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5WDT

70S ribosome-EF-Tu H84A complex with GppNHp

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
23S rRNApolymer2903941548.41GenBank (731469900)Escherichia coli
2B
(B)
5S rRNApolymer12038813.11GenBank (1174070234)Escherichia coli
3C
(C)
50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
Escherichia coliLarge ribosomal subunit protein uL2
4D
(D)
50S ribosomal protein L3polymer20822146.31UniProt (P60438)
Pfam (PF00297)
Escherichia coliLarge ribosomal subunit protein uL3
5E
(E)
50S ribosomal protein L4polymer20021990.41UniProt (P60723)
Pfam (PF00573)
Escherichia coliLarge ribosomal subunit protein uL4
6F
(F)
50S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
Escherichia coliLarge ribosomal subunit protein uL5
7G
(G)
50S ribosomal protein L6polymer17418543.21UniProt (P0AG55)
Pfam (PF00347)
Escherichia coliLarge ribosomal subunit protein uL6
8H
(H)
50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
Escherichia coliLarge ribosomal subunit protein bL9
9I
(I)
50S ribosomal protein L11polymer14114763.21UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
Escherichia coliLarge ribosomal subunit protein uL11
10J
(J)
50S ribosomal protein L13polymer14115937.41UniProt (P0AA10)
Pfam (PF00572)
Escherichia coliLarge ribosomal subunit protein uL13
11K
(K)
50S ribosomal protein L14polymer12213451.91UniProt (P0ADY3)
Pfam (PF00238)
Escherichia coliLarge ribosomal subunit protein uL14
12L
(L)
50S ribosomal protein L15polymer14314879.41UniProt (P02413)
Pfam (PF00828)
Escherichia coliLarge ribosomal subunit protein uL15
13M
(M)
50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
Escherichia coliLarge ribosomal subunit protein uL16
14N
(N)
50S ribosomal protein L17polymer11913592.81UniProt (P0AG44)
Pfam (PF01196)
Escherichia coliLarge ribosomal subunit protein bL17
15O
(O)
50S ribosomal protein L18polymer11612663.51UniProt (P0C018)
Pfam (PF00861)
Escherichia coliLarge ribosomal subunit protein uL18
16P
(P)
50S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
Escherichia coliLarge ribosomal subunit protein bL19
17Q
(Q)
50S ribosomal protein L20polymer11513212.61UniProt (P0A7L3)
Pfam (PF00453)
Escherichia coliLarge ribosomal subunit protein bL20
18R
(R)
50S ribosomal protein L21polymer10211515.31UniProt (P0AG48)
Pfam (PF00829)
Escherichia coliLarge ribosomal subunit protein bL21
19S
(S)
50S ribosomal protein L22polymer10912096.21UniProt (P61175)
Pfam (PF00237)
Escherichia coliLarge ribosomal subunit protein uL22
20T
(T)
50S ribosomal protein L23polymer9210415.31UniProt (P0ADZ0)
Pfam (PF00276)
Escherichia coliLarge ribosomal subunit protein uL23
21U
(U)
50S ribosomal protein L24polymer10211078.91UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
Escherichia coliLarge ribosomal subunit protein uL24
22V
(V)
50S ribosomal protein L25polymer9210511.21UniProt (P68919)
Pfam (PF01386)
Escherichia coliLarge ribosomal subunit protein bL25
23W
(W)
50S ribosomal protein L27polymer758146.41UniProt (P0A7L8)
Pfam (PF01016)
Escherichia coliLarge ribosomal subunit protein bL27
24X
(X)
50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
Escherichia coliLarge ribosomal subunit protein bL28
25Y
(Y)
50S ribosomal protein L29polymer607087.31UniProt (P0A7M6)
Pfam (PF00831)
Escherichia coliLarge ribosomal subunit protein uL29
26Z
(Z)
50S ribosomal protein L30polymer566223.41UniProt (P0AG51)
Pfam (PF00327)
Escherichia coliLarge ribosomal subunit protein uL30
27AA
(0)
50S ribosomal protein L32polymer556203.11UniProt (P0A7N4)
Pfam (PF01783)
Escherichia coliLarge ribosomal subunit protein bL32
28BA
(1)
50S ribosomal protein L33polymer515928.01UniProt (P0A7N9)
Pfam (PF00471)
Escherichia coliLarge ribosomal subunit protein bL33
29CA
(2)
50S ribosomal protein L34polymer455268.31UniProt (P0A7P5)
Pfam (PF00468)
Escherichia coliLarge ribosomal subunit protein bL34
30DA
(3)
50S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
31EA
(4)
50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
Escherichia coliLarge ribosomal subunit protein bL36-A,Ribosomal protein B
32FA
(5)
50S ribosomal protein L10polymer13114112.31UniProt (P0A7J3)
Pfam (PF00466)
Escherichia coli50S ribosomal protein L8,Large ribosomal subunit protein uL10
33GA
(6)
50S ribosomal protein L31polymer667516.71UniProt (P0A7M9)
Pfam (PF01197)
Escherichia coliLarge ribosomal subunit protein bL31-A
34HA
(a)
16S rRNApolymer1540499239.01GenBank (1114169151)Escherichia coli
35IA
(b)
30S ribosomal protein S2polymer21824253.91UniProt (P0A7V0)
Pfam (PF00318)
Escherichia coliSmall ribosomal subunit protein uS2
36JA
(c)
30S ribosomal protein S3polymer20623078.81UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
Escherichia coliSmall ribosomal subunit protein uS3
37KA
(d)
30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
Escherichia coliSmall ribosomal subunit protein uS4
38LA
(e)
30S ribosomal protein S5polymer15716532.11UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
Escherichia coliSmall ribosomal subunit protein uS5
39MA
(f)
30S ribosomal protein S6polymer10011669.41UniProt (P02358)
Pfam (PF01250)
Escherichia coliSmall ribosomal subunit protein bS6
40NA
(g)
30S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
Escherichia coliSmall ribosomal subunit protein uS7
41OA
(h)
30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
Escherichia coliSmall ribosomal subunit protein uS8
42PA
(i)
30S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
Escherichia coliSmall ribosomal subunit protein uS9
43QA
(j)
30S ribosomal protein S10polymer9811197.01UniProt (P0A7R5)
Pfam (PF00338)
Escherichia coliSmall ribosomal subunit protein uS10
44RA
(k)
30S ribosomal protein S11polymer11612388.11UniProt (P0A7R9)
Pfam (PF00411)
Escherichia coliSmall ribosomal subunit protein uS11
45SA
(l)
30S ribosomal protein S12polymer12113436.71UniProt (P0A7S3)
Pfam (PF00164)
Escherichia coliSmall ribosomal subunit protein uS12
46TA
(m)
30S ribosomal protein S13polymer11512738.91UniProt (P0A7S9)
Pfam (PF00416)
Escherichia coliSmall ribosomal subunit protein uS13
47UA
(n)
30S ribosomal protein S14polymer10111546.41UniProt (P0AG59)
Pfam (PF00253)
Escherichia coliSmall ribosomal subunit protein uS14
48VA
(o)
30S ribosomal protein S15polymer8810159.61UniProt (P0ADZ4)
Pfam (PF00312)
Escherichia coliSmall ribosomal subunit protein uS15
49WA
(p)
30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
Escherichia coliSmall ribosomal subunit protein bS16
50XA
(q)
30S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
Escherichia coliSmall ribosomal subunit protein uS17
51YA
(r)
30S ribosomal protein S18polymer657606.81UniProt (P0A7T7)
Pfam (PF01084)
Escherichia coliSmall ribosomal subunit protein bS18
52ZA
(s)
30S ribosomal protein S19polymer799057.61UniProt (P0A7U3)
Pfam (PF00203)
Escherichia coliSmall ribosomal subunit protein uS19
53AB
(t)
30S ribosomal protein S20polymer859506.21UniProt (P0A7U7)
Pfam (PF01649)
Escherichia coliSmall ribosomal subunit protein bS20
54BB
(u)
30S ribosomal protein S21polymer657763.11UniProt (P68679)
Pfam (PF01165)
Escherichia coliSmall ribosomal subunit protein bS21
55CB, DB
(v, w)
tRNA-fMetpolymer7724818.92GenBank (731469900)Escherichia coli
56EB
(x)
mRNApolymer123773.31Escherichia coli
57FB
(y)
tRNA-Phepolymer7624649.91Escherichia coli
58GB
(z)
Elongation factor Tu 2polymer39343172.21UniProt (P0CE48)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF03143)
Escherichia coliEF-Tu 2,Bacteriophage Q beta RNA-directed RNA polymerase subunit III,P-43
59HB
(A)
N-FORMYLMETHIONINEnon-polymer177.21Chemie (FME)
60AAA, AAB, ABA, ABB, AC...
(A, B, D, a, v...)
MAGNESIUM IONnon-polymer24.31904Chemie (MG)
61EAB, FAB, GAB, HAB, IAB
(A)
POTASSIUM IONnon-polymer39.15Chemie (K)
62PWB
(z)
PHENYLALANINEnon-polymer165.21Chemie (PHE)
63QWB
(z)
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.21Chemie (GNP)
64AXB, AYB, BXB, BYB, CXB...
(G, v, J, w, L...)
waterwater18.0920Chemie (HOH)
Sequence modifications
A: 1 - 2903 (GenBank: 731469900)
PDBExternal DatabaseDetails
5mc 747U 227841conflict
G 1723A 228817conflict
G 1847A 228941conflict
B: 1 - 120 (GenBank: 1174070234)
PDBExternal DatabaseDetails
A 120U 4191848conflict
n: 1 - 101 (UniProt: P0AG59)
PDBExternal DatabaseDetails
Ala 35-insertion
z: 1 - 393 (UniProt: P0CE48)
PDBExternal DatabaseDetails
Ala 84His 85engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2260659.0
Non-Polymers*Number of molecules1912
Total formula weight47336.8
All*Total formula weight2307995.9
*Water molecules are not included.

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PDB entries from 2024-11-20

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