5W1X
Crystal Structure of Humanpapillomavirus18 (HPV18) Capsid L1 Pentamers Bound to Heparin Oligosaccharides
Replaces: 3OFLEntity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... | Major capsid protein L1 | polymer | 427 | 47478.0 | 15 | UniProt (Q5G244) Pfam (PF00500) UniProt (by SIFTS) (P06794) In PDB | Human papillomavirus type 18 | |
2 | a, d, i, j, k... | 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose | branched | 500.4 | 19 | In PDB GlyTouCan (G75183WV) | |||
3 | b, c, g, h, p... | 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose | branched | 982.8 | 9 | In PDB GlyTouCan (G12683PR) | |||
4 | e | 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose | branched | 1465.2 | 1 | In PDB GlyTouCan (G29325GF) | |||
5 | f | 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose | branched | 2430.0 | 1 | In PDB GlyTouCan (G59499PQ) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O: 21 - 404 (UniProt: Q5G244)
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O: 438 - 474 (UniProt: Q5G244)
PDB | External Database | Details |
---|---|---|
Ala 20 | - | expression tag |
Asp 47 | Asn 98 | engineered mutation |
Ser 175 | Cys 226 | engineered mutation |
Gln 393 | His 444 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Gly 433 | - | linker |
Gly 434 | - | linker |
Ser 435 | - | linker |
Gly 436 | - | linker |
Gly 437 | - | linker |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 15 |
Total formula weight | 712170.5 | |
Branched | Number of molecules | 30 |
Total formula weight | 22248.1 | |
All* | Total formula weight | 734418.6 |