5W0P
Crystal structure of rhodopsin bound to visual arrestin determined by X-ray free electron laser
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | Endolysin,Rhodopsin,S-arrestin | polymer | 906 | 101023.0 | 2 | UniProt (A0A097J792) UniProt (P08100) UniProt (P20443) Pfam (PF00959) Pfam (PF10413) Pfam (PF00001) Pfam (PF00339) Pfam (PF02752) UniProt (by SIFTS) (P00720) In PDB | Enterobacteria phage RB55 | Lysis protein,Lysozyme,Muramidase,Opsin-2,48 kDa protein,Retinal S-antigen,S-AG,Rod photoreceptor arrestin |
| 2 | C, D | Endolysin,Rhodopsin,S-arrestin | polymer | 906 | 100943.1 | 2 | UniProt (A0A097J792) UniProt (P08100) UniProt (P20443) Pfam (PF02752) Pfam (PF00959) Pfam (PF10413) Pfam (PF00001) Pfam (PF00339) UniProt (by SIFTS) (P00720) In PDB | Enterobacteria phage RB55 | Lysis protein,Lysozyme,Muramidase,Opsin-2,48 kDa protein,Retinal S-antigen,S-AG,Rod photoreceptor arrestin |
| 3 | E, F, G, H | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 4 | In PDB GlyTouCan (G42666HT) |
Sequence modifications
A, B: -159 - 0 (UniProt: A0A097J792)
A, B: 1 - 1994 (UniProt: P08100)
A, B: 2010 - 2392 (UniProt: P20443)
C, D: -159 - 0 (UniProt: A0A097J792)
C, D: 1 - 1994 (UniProt: P08100)
C, D: 2010 - 2392 (UniProt: P20443)
| PDB | External Database | Details |
|---|---|---|
| Thr -107 | Cys 54 | engineered mutation |
| Ala -64 | Cys 97 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Cys 2 | Asn 2 | engineered mutation |
| Gln 113 | Glu 113 | engineered mutation |
| Tyr 257 | Met 257 | engineered mutation |
| Cys 282 | Asn 282 | engineered mutation |
| Gly 1995 | - | linker |
| Ser 1996 | - | linker |
| Ala 1997 | - | linker |
| Gly 1998 | - | linker |
| Ser 1999 | - | linker |
| Ala 2000 | - | linker |
| Gly 2001 | - | linker |
| Ser 2002 | - | linker |
| Ala 2003 | - | linker |
| Gly 2004 | - | linker |
| Ser 2005 | - | linker |
| Ala 2006 | - | linker |
| Gly 2007 | - | linker |
| Ser 2008 | - | linker |
| Ala 2009 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Ala 2374 | Leu 374 | engineered mutation |
| Ala 2375 | Val 375 | engineered mutation |
| Ala 2376 | Phe 376 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Thr -107 | Cys 54 | engineered mutation |
| Ala -64 | Cys 97 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Cys 2 | Asn 2 | engineered mutation |
| Gln 113 | Glu 113 | engineered mutation |
| Tyr 257 | Met 257 | engineered mutation |
| Cys 282 | Asn 282 | engineered mutation |
| Gly 1995 | - | linker |
| Ser 1996 | - | linker |
| Ala 1997 | - | linker |
| Gly 1998 | - | linker |
| Ser 1999 | - | linker |
| Ala 2000 | - | linker |
| Gly 2001 | - | linker |
| Ser 2002 | - | linker |
| Ala 2003 | - | linker |
| Gly 2004 | - | linker |
| Ser 2005 | - | linker |
| Ala 2006 | - | linker |
| Gly 2007 | - | linker |
| Ser 2008 | - | linker |
| Ala 2009 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Ala 2374 | Leu 374 | engineered mutation |
| Ala 2375 | Val 375 | engineered mutation |
| Ala 2376 | Phe 376 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 403932.2 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 1697.6 | |
| All* | Total formula weight | 405629.8 |
