5VSW
X-ray crystal structure of Escherichia coli RNA polymerase and DksA/ppGpp complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, G, H | DNA-directed RNA polymerase subunit alpha | polymer | 329 | 36558.7 | 4 | UniProt (P0A7Z4) Pfam (PF01193) Pfam (PF01000) Pfam (PF03118) In PDB | Escherichia coli (strain K12) | RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha |
| 2 | C, I | DNA-directed RNA polymerase subunit beta | polymer | 1342 | 150820.9 | 2 | UniProt (P0A8V2) Pfam (PF04560) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) In PDB | Escherichia coli (strain K12) | RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta |
| 3 | D, J | DNA-directed RNA polymerase subunit beta' | polymer | 1407 | 155366.8 | 2 | UniProt (P0A8T7) Pfam (PF04997) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) In PDB | Escherichia coli (strain K12) | RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta' |
| 4 | E, K | DNA-directed RNA polymerase subunit omega | polymer | 91 | 10249.5 | 2 | UniProt (P0A800) Pfam (PF01192) In PDB | Escherichia coli (strain K12) | RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega |
| 5 | F, L | RNA polymerase sigma factor RpoD | polymer | 613 | 70352.2 | 2 | UniProt (P00579) Pfam (PF03979) Pfam (PF00140) Pfam (PF04546) Pfam (PF04542) Pfam (PF04539) Pfam (PF04545) In PDB | Escherichia coli (strain K12) | Sigma-70 |
| 6 | M | RNA polymerase-binding transcription factor DksA | polymer | 151 | 17554.8 | 1 | UniProt (P0ABS1) Pfam (PF21157) Pfam (PF01258) In PDB | Escherichia coli (strain K12) | DnaK suppressor protein |
| 7 | D, J | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 8 | D, J, M | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 9 | E, J, M | GUANOSINE-5',3'-TETRAPHOSPHATE | non-polymer | 603.2 | 3 | Chemie (G4P) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 13 |
| Total formula weight | 937368.4 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 2185.1 | |
| All* | Total formula weight | 939553.5 |
