5VMA
Structure of B. pumilus GH48 in complex with a cellobio-derived isofagomine
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Glycoside hydrolase | polymer | 709 | 79934.6 | 1 | UniProt (A8FDC4) Pfam (PF02011) In PDB | Bacillus pumilus | |
2 | A | (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl 4-O-beta-D-glucopyranosyl-beta-D-glucopyranoside | non-polymer | 471.5 | 2 | Chemie (G2I) | |||
3 | A | (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranoside | non-polymer | 309.3 | 1 | Chemie (9MR) | |||
4 | A | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
5 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
6 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 12 | Chemie (EDO) | |||
7 | A | MALONATE ION | non-polymer | 102.0 | 1 | Chemie (MLI) | |||
8 | A | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) | |||
9 | water | water | 18.0 | 579 | Chemie (HOH) |
Sequence modifications
A: 1 - 701 (UniProt: A8FDC4)
PDB | External Database | Details |
---|---|---|
Leu 702 | - | expression tag |
Glu 703 | - | expression tag |
His 704 | - | expression tag |
His 705 | - | expression tag |
His 706 | - | expression tag |
His 707 | - | expression tag |
His 708 | - | expression tag |
His 709 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 79934.6 | |
Non-Polymers* | Number of molecules | 20 |
Total formula weight | 2261.3 | |
All* | Total formula weight | 82195.9 |