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5VHV

Pseudomonas fluorescens alkylpurine DNA glycosylase AlkC bound to DNA containing an oxocarbenium-intermediate analog

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
alkylpurine DNA glycosylase AlkCpolymer36140539.52UniProt (C3K795)
Pfam (PF08713)
Pseudomonas fluorescens
2C, E
(C, E)
DNA (5'-D(*TP*GP*TP*CP*CP*AP*(NRI)P*GP*TP*CP*T)-3')polymer113190.12synthetic construct
3D, F
(D, F)
DNA (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3')polymer113382.22synthetic construct
4G, N
(A, F)
GLYCEROLnon-polymer92.12Chemie (GOL)
5H, I, J
(A, B)
2-(N-MORPHOLINO)-ETHANESULFONIC ACIDnon-polymer195.23Chemie (MES)
6K, M
(C, E)
SODIUM IONnon-polymer23.02Chemie (NA)
7L, O
(D, F)
(2R,5R,13R,16R)-9-(hydroxymethyl)-9-{[(2R)-2-hydroxypropoxy]methyl}-5,13-dimethyl-4,7,11,14-tetraoxaheptadecane-2,16-diolnon-polymer426.52Chemie (9B4)
8P, Q, R, S, T...
(A, B, C, D, E...)
waterwater18.01275Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight94223.7
Non-Polymers*Number of molecules9
Total formula weight1669.0
All*Total formula weight95892.7
*Water molecules are not included.

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PDB entries from 2025-12-24

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