5VCL
Structure of the Qdm peptide bound to Qa-1a
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | H2-T23 protein | polymer | 278 | 32514.1 | 1 | UniProt (Q31153) Pfam (PF00129) Pfam (PF07654) | Mus musculus (Mouse) | MHC Qa-1a,Qa-1 |
| 2 | B (B) | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 3 | C (P) | Qdm peptide | polymer | 9 | 986.3 | 1 | UniProt (P01897) | Mus musculus | H-2 class I histocompatibility antigen, L-D alpha chain |
| 4 | D, E, F, M (A, B) | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
| 5 | G, H, I, J, K... (A) | SODIUM ION | non-polymer | 23.0 | 6 | Chemie (NA) | |||
| 6 | N, O, P (A, B, P) | water | water | 18.0 | 120 | Chemie (HOH) |
Sequence modifications
A: 1 - 277 (UniProt: Q31153)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 45160.8 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 506.3 | |
| All* | Total formula weight | 45667.1 |
