5UYQ
70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (04) | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli (strain K12) | |
| 2 | B (05) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli (strain K12) | |
| 3 | C (06) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) | Escherichia coli (strain K12) | |
| 4 | D (07) | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli (strain K12) | |
| 5 | E (08) | 50S ribosomal protein L6 | polymer | 176 | 18801.6 | 1 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli (strain K12) | |
| 6 | F (09) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli (strain K12) | |
| 7 | G (10) | 50S ribosomal protein L10 | polymer | 131 | 14112.3 | 1 | UniProt (P0A7J3) Pfam (PF00466) | Escherichia coli (strain K12) | |
| 8 | H (11) | 50S ribosomal protein L11 | polymer | 141 | 14763.2 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) | Escherichia coli (strain K12) | |
| 9 | I (12) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) | Escherichia coli (strain K12) | |
| 10 | J (13) | 50S ribosomal protein L14 | polymer | 122 | 13451.9 | 1 | UniProt (P0ADY3) Pfam (PF00238) | Escherichia coli (strain K12) | |
| 11 | K (14) | 50S ribosomal protein L15 | polymer | 143 | 14877.3 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli (strain K12) | |
| 12 | L (15) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli (strain K12) | |
| 13 | M (16) | 50S ribosomal protein L17 | polymer | 120 | 13721.9 | 1 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli (strain K12) | |
| 14 | N (17) | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli (strain K12) | |
| 15 | O (18) | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (P0A7K6) Pfam (PF01245) | Escherichia coli (strain K12) | |
| 16 | P (19) | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (P0A7L3) Pfam (PF00453) | Escherichia coli (strain K12) | |
| 17 | Q (20) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) | Escherichia coli (strain K12) | |
| 18 | R (21) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli (strain K12) | |
| 19 | S (22) | 50S ribosomal protein L23 | polymer | 93 | 10546.5 | 1 | UniProt (P0ADZ0) Pfam (PF00276) | Escherichia coli (strain K12) | |
| 20 | T (23) | 50S ribosomal protein L24 | polymer | 102 | 11078.9 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli (strain K12) | |
| 21 | U (24) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli (strain K12) | |
| 22 | V (25) | 50S ribosomal protein L27 | polymer | 75 | 8174.4 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli (strain K12) | |
| 23 | W (26) | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (P0A7M2) Pfam (PF00830) | Escherichia coli (strain K12) | |
| 24 | X (27) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli (strain K12) | |
| 25 | Y (28) | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli (strain K12) | |
| 26 | Z (29) | 50S ribosomal protein L31 | polymer | 66 | 7516.7 | 1 | UniProt (P0A7M9) Pfam (PF01197) | Escherichia coli (strain K12) | |
| 27 | AA (30) | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (P0A7N4) Pfam (PF01783) | Escherichia coli (strain K12) | |
| 28 | BA (31) | 50S ribosomal protein L33 | polymer | 50 | 5814.8 | 1 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli (strain K12) | |
| 29 | CA (32) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli (strain K12) | |
| 30 | DA (33) | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli (strain K12) | |
| 31 | EA (34) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) | Escherichia coli (strain K12) | |
| 32 | FA (B) | 30S ribosomal protein S2 | polymer | 218 | 24253.9 | 1 | UniProt (P0A7V0) Pfam (PF00318) | Escherichia coli (strain K12) | |
| 33 | GA (C) | 30S ribosomal protein S3 | polymer | 206 | 23078.8 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) | Escherichia coli (strain K12) | |
| 34 | HA (D) | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli (strain K12) | |
| 35 | IA (E) | 30S ribosomal protein S5 | polymer | 157 | 16532.1 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli (strain K12) | |
| 36 | JA (F) | 30S ribosomal protein S6 | polymer | 100 | 11669.4 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli (strain K12) | |
| 37 | KA (G) | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli (strain K12) | |
| 38 | LA (H) | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (P0A7W7) Pfam (PF00410) | Escherichia coli (strain K12) | |
| 39 | MA (I) | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 1 | UniProt (P0A7X3) Pfam (PF00380) | Escherichia coli (strain K12) | |
| 40 | NA (J) | 30S ribosomal protein S10 | polymer | 98 | 11197.0 | 1 | UniProt (P0A7R5) Pfam (PF00338) | Escherichia coli (strain K12) | |
| 41 | OA (K) | 30S ribosomal protein S11 | polymer | 116 | 12388.1 | 1 | UniProt (P0A7R9) Pfam (PF00411) | Escherichia coli (strain K12) | |
| 42 | PA (L) | 30S ribosomal protein S12 | polymer | 123 | 13637.0 | 1 | UniProt (P0A7S3) Pfam (PF00164) | Escherichia coli (strain K12) | |
| 43 | QA (M) | 30S ribosomal protein S13 | polymer | 114 | 12625.8 | 1 | UniProt (P0A7S9) Pfam (PF00416) | Escherichia coli (strain K12) | |
| 44 | RA (N) | 30S ribosomal protein S14 | polymer | 100 | 11475.4 | 1 | UniProt (P0AG59) Pfam (PF00253) | Escherichia coli (strain K12) | |
| 45 | SA (O) | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (P0ADZ4) Pfam (PF00312) | Escherichia coli (strain K12) | |
| 46 | TA (P) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) | Escherichia coli (strain K12) | |
| 47 | UA (Q) | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (P0AG63) Pfam (PF00366) | Escherichia coli (strain K12) | |
| 48 | VA (R) | 30S ribosomal protein S18 | polymer | 65 | 7606.8 | 1 | UniProt (P0A7T7) Pfam (PF01084) | Escherichia coli (strain K12) | |
| 49 | WA (S) | 30S ribosomal protein S19 | polymer | 79 | 9057.6 | 1 | UniProt (P0A7U3) Pfam (PF00203) | Escherichia coli (strain K12) | |
| 50 | XA (T) | 30S ribosomal protein S20 | polymer | 85 | 9506.2 | 1 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli (strain K12) | |
| 51 | YA (U) | 30S ribosomal protein S21 | polymer | 65 | 7763.1 | 1 | UniProt (P68679) Pfam (PF01165) | Escherichia coli (strain K12) | |
| 52 | ZA (03) | 50S ribosomal protein L1 | polymer | 223 | 23735.5 | 1 | UniProt (P0A7L0) Pfam (PF00687) | Escherichia coli (strain K12) | |
| 53 | AB (A) | 16S ribosomal RNA | polymer | 1539 | 498725.4 | 1 | GenBank (1108575010) | Escherichia coli (strain K12) | |
| 54 | BB (01) | 23S ribosomal RNA | polymer | 2903 | 941305.3 | 1 | GenBank (802133627) | Escherichia coli (strain K12) | |
| 55 | CB (02) | 5S ribosomal RNA | polymer | 120 | 38813.1 | 1 | GenBank (1108609475) | Escherichia coli (strain K12) | |
| 56 | DB, FB (X, W) | tRNAfMet | polymer | 77 | 24802.8 | 2 | GenBank (1160538609) | Escherichia coli (strain K12) | |
| 57 | EB (V) | mRNA | polymer | 18 | 5930.7 | 1 | Escherichia coli (strain K12) | ||
| 58 | GB (Y) | tRNALys | polymer | 76 | 24437.5 | 1 | GenBank (558570689) | Escherichia coli (strain K12) | |
| 59 | HB (Z) | Elongation factor Tu 2 | polymer | 392 | 43152.2 | 1 | UniProt (P0CE47) Pfam (PF00009) Pfam (PF03144) Pfam (PF03143) | Escherichia coli (strain K12) | |
| 60 | IB (W) | N-FORMYLMETHIONINE | non-polymer | 177.2 | 1 | Chemie (FME) | |||
| 61 | JB (Y) | LYSINE | non-polymer | 147.2 | 1 | Chemie (LYS) | |||
| 62 | KB (Z) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 63 | LB (Z) | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | non-polymer | 521.2 | 1 | Chemie (GCP) |
Sequence modifications
01: 1 - 2903 (GenBank: 802133627)
Y: 1 - 76 (GenBank: 558570689)
| PDB | External Database | Details |
|---|---|---|
| C 747 | U 2724742 | conflict |
| PDB | External Database | Details |
|---|---|---|
| U8u 34 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 60 |
| Total formula weight | 2287626.1 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 869.9 | |
| All* | Total formula weight | 2288496.0 |
