5UYQ
70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 04 | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB | Escherichia coli (strain K12) | |
| 2 | 05 | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) In PDB | Escherichia coli (strain K12) | |
| 3 | 06 | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) In PDB | Escherichia coli (strain K12) | |
| 4 | 07 | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) In PDB | Escherichia coli (strain K12) | |
| 5 | 08 | 50S ribosomal protein L6 | polymer | 176 | 18801.6 | 1 | UniProt (P0AG55) Pfam (PF00347) In PDB | Escherichia coli (strain K12) | |
| 6 | 09 | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB | Escherichia coli (strain K12) | |
| 7 | 10 | 50S ribosomal protein L10 | polymer | 131 | 14112.3 | 1 | UniProt (P0A7J3) Pfam (PF00466) In PDB | Escherichia coli (strain K12) | |
| 8 | 11 | 50S ribosomal protein L11 | polymer | 141 | 14763.2 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) In PDB | Escherichia coli (strain K12) | |
| 9 | 12 | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) In PDB | Escherichia coli (strain K12) | |
| 10 | 13 | 50S ribosomal protein L14 | polymer | 122 | 13451.9 | 1 | UniProt (P0ADY3) Pfam (PF00238) In PDB | Escherichia coli (strain K12) | |
| 11 | 14 | 50S ribosomal protein L15 | polymer | 143 | 14877.3 | 1 | UniProt (P02413) Pfam (PF00828) In PDB | Escherichia coli (strain K12) | |
| 12 | 15 | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) In PDB | Escherichia coli (strain K12) | |
| 13 | 16 | 50S ribosomal protein L17 | polymer | 120 | 13721.9 | 1 | UniProt (P0AG44) Pfam (PF01196) In PDB | Escherichia coli (strain K12) | |
| 14 | 17 | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 1 | UniProt (P0C018) Pfam (PF00861) In PDB | Escherichia coli (strain K12) | |
| 15 | 18 | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (P0A7K6) Pfam (PF01245) In PDB | Escherichia coli (strain K12) | |
| 16 | 19 | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (P0A7L3) Pfam (PF00453) In PDB | Escherichia coli (strain K12) | |
| 17 | 20 | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) In PDB | Escherichia coli (strain K12) | |
| 18 | 21 | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) In PDB | Escherichia coli (strain K12) | |
| 19 | 22 | 50S ribosomal protein L23 | polymer | 93 | 10546.5 | 1 | UniProt (P0ADZ0) Pfam (PF00276) In PDB | Escherichia coli (strain K12) | |
| 20 | 23 | 50S ribosomal protein L24 | polymer | 102 | 11078.9 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) In PDB | Escherichia coli (strain K12) | |
| 21 | 24 | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) In PDB | Escherichia coli (strain K12) | |
| 22 | 25 | 50S ribosomal protein L27 | polymer | 75 | 8174.4 | 1 | UniProt (P0A7L8) Pfam (PF01016) In PDB | Escherichia coli (strain K12) | |
| 23 | 26 | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (P0A7M2) Pfam (PF00830) In PDB | Escherichia coli (strain K12) | |
| 24 | 27 | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) In PDB | Escherichia coli (strain K12) | |
| 25 | 28 | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) Pfam (PF00327) In PDB | Escherichia coli (strain K12) | |
| 26 | 29 | 50S ribosomal protein L31 | polymer | 66 | 7516.7 | 1 | UniProt (P0A7M9) Pfam (PF01197) In PDB | Escherichia coli (strain K12) | |
| 27 | 30 | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (P0A7N4) Pfam (PF01783) In PDB | Escherichia coli (strain K12) | |
| 28 | 31 | 50S ribosomal protein L33 | polymer | 50 | 5814.8 | 1 | UniProt (P0A7N9) Pfam (PF00471) In PDB | Escherichia coli (strain K12) | |
| 29 | 32 | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) In PDB | Escherichia coli (strain K12) | |
| 30 | 33 | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) Pfam (PF01632) In PDB | Escherichia coli (strain K12) | |
| 31 | 34 | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) In PDB | Escherichia coli (strain K12) | |
| 32 | B | 30S ribosomal protein S2 | polymer | 218 | 24253.9 | 1 | UniProt (P0A7V0) Pfam (PF00318) In PDB | Escherichia coli (strain K12) | |
| 33 | C | 30S ribosomal protein S3 | polymer | 206 | 23078.8 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) In PDB | Escherichia coli (strain K12) | |
| 34 | D | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB | Escherichia coli (strain K12) | |
| 35 | E | 30S ribosomal protein S5 | polymer | 157 | 16532.1 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB | Escherichia coli (strain K12) | |
| 36 | F | 30S ribosomal protein S6 | polymer | 100 | 11669.4 | 1 | UniProt (P02358) Pfam (PF01250) In PDB | Escherichia coli (strain K12) | |
| 37 | G | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (P02359) Pfam (PF00177) In PDB | Escherichia coli (strain K12) | |
| 38 | H | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (P0A7W7) Pfam (PF00410) In PDB | Escherichia coli (strain K12) | |
| 39 | I | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 1 | UniProt (P0A7X3) Pfam (PF00380) In PDB | Escherichia coli (strain K12) | |
| 40 | J | 30S ribosomal protein S10 | polymer | 98 | 11197.0 | 1 | UniProt (P0A7R5) Pfam (PF00338) In PDB | Escherichia coli (strain K12) | |
| 41 | K | 30S ribosomal protein S11 | polymer | 116 | 12388.1 | 1 | UniProt (P0A7R9) Pfam (PF00411) In PDB | Escherichia coli (strain K12) | |
| 42 | L | 30S ribosomal protein S12 | polymer | 123 | 13637.0 | 1 | UniProt (P0A7S3) Pfam (PF00164) In PDB | Escherichia coli (strain K12) | |
| 43 | M | 30S ribosomal protein S13 | polymer | 114 | 12625.8 | 1 | UniProt (P0A7S9) Pfam (PF00416) In PDB | Escherichia coli (strain K12) | |
| 44 | N | 30S ribosomal protein S14 | polymer | 100 | 11475.4 | 1 | UniProt (P0AG59) Pfam (PF00253) In PDB | Escherichia coli (strain K12) | |
| 45 | O | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (P0ADZ4) Pfam (PF00312) In PDB | Escherichia coli (strain K12) | |
| 46 | P | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) In PDB | Escherichia coli (strain K12) | |
| 47 | Q | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (P0AG63) Pfam (PF00366) In PDB | Escherichia coli (strain K12) | |
| 48 | R | 30S ribosomal protein S18 | polymer | 65 | 7606.8 | 1 | UniProt (P0A7T7) Pfam (PF01084) In PDB | Escherichia coli (strain K12) | |
| 49 | S | 30S ribosomal protein S19 | polymer | 79 | 9057.6 | 1 | UniProt (P0A7U3) Pfam (PF00203) In PDB | Escherichia coli (strain K12) | |
| 50 | T | 30S ribosomal protein S20 | polymer | 85 | 9506.2 | 1 | UniProt (P0A7U7) Pfam (PF01649) In PDB | Escherichia coli (strain K12) | |
| 51 | U | 30S ribosomal protein S21 | polymer | 65 | 7763.1 | 1 | UniProt (P68679) Pfam (PF01165) In PDB | Escherichia coli (strain K12) | |
| 52 | 03 | 50S ribosomal protein L1 | polymer | 223 | 23735.5 | 1 | UniProt (P0A7L0) Pfam (PF00687) In PDB | Escherichia coli (strain K12) | |
| 53 | A | 16S ribosomal RNA | polymer | 1539 | 498725.4 | 1 | GenBank (1108575010) | Escherichia coli (strain K12) | |
| 54 | 01 | 23S ribosomal RNA | polymer | 2903 | 941305.3 | 1 | GenBank (802133627) | Escherichia coli (strain K12) | |
| 55 | 02 | 5S ribosomal RNA | polymer | 120 | 38813.1 | 1 | GenBank (1108609475) | Escherichia coli (strain K12) | |
| 56 | X, W | tRNAfMet | polymer | 77 | 24802.8 | 2 | GenBank (1160538609) | Escherichia coli (strain K12) | |
| 57 | V | mRNA | polymer | 18 | 5930.7 | 1 | Escherichia coli (strain K12) | ||
| 58 | Y | tRNALys | polymer | 76 | 24437.5 | 1 | GenBank (558570689) | Escherichia coli (strain K12) | |
| 59 | Z | Elongation factor Tu 2 | polymer | 392 | 43152.2 | 1 | UniProt (P0CE47) Pfam (PF00009) Pfam (PF03144) Pfam (PF03143) In PDB | Escherichia coli (strain K12) | |
| 60 | W | N-FORMYLMETHIONINE | non-polymer | 177.2 | 1 | Chemie (FME) | |||
| 61 | Y | LYSINE | non-polymer | 147.2 | 1 | Chemie (LYS) | |||
| 62 | Z | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 63 | Z | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | non-polymer | 521.2 | 1 | Chemie (GCP) |
Sequence modifications
01: 1 - 2903 (GenBank: 802133627)
Y: 1 - 76 (GenBank: 558570689)
| PDB | External Database | Details |
|---|---|---|
| C 747 | U 2724742 | conflict |
| PDB | External Database | Details |
|---|---|---|
| U8u 34 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 60 |
| Total formula weight | 2287626.1 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 869.9 | |
| All* | Total formula weight | 2288496.0 |
