5UUH
Bacillus cereus DNA glycosylase AlkD bound to a yatakemycin-adenine nucleobase adduct and DNA containing a fluorinated abasic site (9-mer product complex)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DNA-7-methylguanine glycosylase | polymer | 241 | 28578.0 | 1 | UniProt (C2T7T7) Pfam (PF08713) UniProt (by SIFTS) (Q816E8) | Bacillus cereus | AlkD |
| 2 | B (B) | DNA (5'-D(*AP*GP*GP*CP*AP*(ORF)P*AP*GP*C)-3') | polymer | 9 | 2674.7 | 1 | synthetic construct | ||
| 3 | C (C) | DNA (5'-D(*TP*GP*CP*TP*TP*TP*GP*CP*C)-3') | polymer | 9 | 2697.8 | 1 | synthetic construct | ||
| 4 | D (A) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) | |||
| 5 | E (B) | yatakemycin-adenine nucleobase adduct | non-polymer | 814.8 | 1 | Chemie (YTA) | |||
| 6 | F, G, H (A, B, C) | water | water | 18.0 | 353 | Chemie (HOH) |
Sequence modifications
A: 1 - 237 (UniProt: C2T7T7)
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Val -1 | - | expression tag |
| Pro 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 33950.5 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 854.9 | |
| All* | Total formula weight | 34805.4 |
