5UUF
Bacillus cereus DNA glycosylase AlkD bound to a yatakemycin-adenine nucleobase adduct and DNA containing an abasic site (12-mer product complex)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA-7-methylguanine glycosylase | polymer | 241 | 28578.0 | 1 | UniProt (C2T7T7) Pfam (PF08713) UniProt (by SIFTS) (Q816E8) In PDB | Bacillus cereus | AlkD |
2 | B | DNA (5'-D(*CP*CP*CP*CP*AP*(ORP)P*AP*GP*CP*CP*CP*G)-3') | polymer | 12 | 3460.2 | 1 | synthetic construct | ||
3 | C | DNA (5'-D(*CP*GP*GP*GP*CP*TP*TP*TP*GP*GP*GP*G)-3') | polymer | 12 | 3750.4 | 1 | synthetic construct | ||
4 | B | yatakemycin-adenine nucleobase adduct | non-polymer | 814.8 | 1 | Chemie (YTA) | |||
5 | water | water | 18.0 | 314 | Chemie (HOH) |
Sequence modifications
A: 1 - 237 (UniProt: C2T7T7)
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Pro -2 | - | expression tag |
Val -1 | - | expression tag |
Pro 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 35788.7 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 814.8 | |
All* | Total formula weight | 36603.5 |