5UQ8
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ("out" conformation)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 23S rRNA | polymer | 2915 | 948035.6 | 1 | GenBank (55771382) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 2 | B (B) | 5S rRNA | polymer | 120 | 38882.2 | 1 | GenBank (55771382) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 3 | C (D) | 50S ribosomal protein L2 | polymer | 275 | 30401.4 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 4 | D (E) | 50S ribosomal protein L3 | polymer | 204 | 22250.0 | 1 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 5 | E (F) | 50S ribosomal protein L4 | polymer | 203 | 22512.0 | 1 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 6 | F (G) | 50S ribosomal protein L5 | polymer | 181 | 20930.4 | 1 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 7 | G (H) | 50S ribosomal protein L6 | polymer | 173 | 18893.1 | 1 | UniProt (Q5SHQ3) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 8 | H (I) | 50S ribosomal protein L9 | polymer | 146 | 16164.9 | 1 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 9 | I (N) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 1 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 10 | J (O) | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 1 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 11 | K (P) | 50S ribosomal protein L15 | polymer | 149 | 16248.1 | 1 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 12 | L (Q) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 1 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 13 | M (R) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 14 | N (S) | 50S ribosomal protein L18 | polymer | 110 | 12437.6 | 1 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 15 | O (T) | 50S ribosomal protein L19 | polymer | 131 | 15503.0 | 1 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 16 | P (U) | 50S ribosomal protein L20 | polymer | 116 | 13591.0 | 1 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 17 | Q (V) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 18 | R (W) | 50S ribosomal protein L22 | polymer | 112 | 12678.9 | 1 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 19 | S (X) | 50S ribosomal protein L23 | polymer | 95 | 10646.6 | 1 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 20 | T (Y) | 50S ribosomal protein L24 | polymer | 107 | 11726.3 | 1 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 21 | U (Z) | 50S ribosomal protein L25 | polymer | 187 | 21139.3 | 1 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 22 | V (0) | 50S ribosomal protein L27 | polymer | 77 | 8689.0 | 1 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 23 | W (1) | 50S ribosomal protein L28 | polymer | 97 | 10873.0 | 1 | UniProt (P60494) Pfam (PF00830) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 24 | X (2) | 50S ribosomal protein L29 | polymer | 70 | 8485.1 | 1 | UniProt (Q5SHP6) Pfam (PF00831) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 25 | Y (3) | 50S ribosomal protein L30 | polymer | 59 | 6667.9 | 1 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 26 | Z (4) | 50S ribosomal protein L31 | polymer | 69 | 8086.3 | 1 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 27 | AA (5) | 50S ribosomal protein L32 | polymer | 59 | 6590.9 | 1 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 28 | BA (6) | 50S ribosomal protein L33 | polymer | 53 | 6501.7 | 1 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 29 | CA (7) | 50S ribosomal protein L34 | polymer | 48 | 5975.3 | 1 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 30 | DA (8) | 50S ribosomal protein L35 | polymer | 64 | 7375.0 | 1 | UniProt (Q5SKU1) Pfam (PF01632) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 31 | EA (9) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 1 | UniProt (Q5SHR2) Pfam (PF00444) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 32 | FA (a) | 16S rRNA | polymer | 1521 | 493903.7 | 1 | GenBank (55771382) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 33 | GA (b) | 30S ribosomal protein S2 | polymer | 231 | 26646.9 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 34 | HA (c) | 30S ribosomal protein S3 | polymer | 206 | 22862.4 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 35 | IA (d) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 36 | JA (e) | 30S ribosomal protein S5 | polymer | 148 | 16144.8 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 37 | KA (f) | 30S ribosomal protein S6 | polymer | 100 | 11917.7 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 38 | LA (g) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 39 | MA (h) | 30S ribosomal protein S8 | polymer | 137 | 15737.4 | 1 | UniProt (Q5SHQ2) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 40 | NA (i) | 30S ribosomal protein S9 | polymer | 126 | 14122.2 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 41 | OA (j) | 30S ribosomal protein S10 | polymer | 96 | 11056.8 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 42 | PA (k) | 30S ribosomal protein S11 | polymer | 114 | 12032.7 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 43 | QA (l) | 30S ribosomal protein S12 | polymer | 122 | 13650.2 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 44 | RA (m) | 30S ribosomal protein S13 | polymer | 114 | 13067.2 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 45 | SA (n) | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 46 | TA (o) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 47 | UA (p) | 30S ribosomal protein S16 | polymer | 82 | 9795.4 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 48 | VA (q) | 30S ribosomal protein S17 | polymer | 99 | 11722.9 | 1 | UniProt (Q5SHP7) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 49 | WA (r) | 30S ribosomal protein S18 | polymer | 68 | 7897.5 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 50 | XA (s) | 30S ribosomal protein S19 | polymer | 83 | 9456.0 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 51 | YA (t) | 30S ribosomal protein S20 | polymer | 98 | 10876.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 52 | ZA (u) | 30S ribosomal protein Thx | polymer | 23 | 2831.3 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 53 | AB (y) | P-site tRNA fMet | polymer | 77 | 24801.8 | 1 | GenBank (1126835761) | Escherichia coli K-12 | |
| 54 | BB (C) | 50S ribosomal protein L1 | polymer | 226 | 24513.2 | 1 | UniProt (Q5SLP7) Pfam (PF00687) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 55 | CB (z) | E-site tRNA Phe | polymer | 76 | 24485.5 | 1 | GenBank (1126835761) | Escherichia coli K-12 | |
| 56 | DB (x) | messenger RNA | polymer | 55 | 17773.7 | 1 | synthetic construct | ||
| 57 | EB, FB, GB, HB, IB... (Y, 4, 5, 6, 9...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 58 | JB (d) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 1 | Chemie (SF4) |
Sequence modifications
a: 1 - 1541 (GenBank: 55771382)
y: 1 - 76 (GenBank: 1126835761)
C: 2 - 228 (UniProt: Q5SLP7)
| PDB | External Database | Details |
|---|---|---|
| G 1542 | - | insertion |
| C 1543 | - | insertion |
| U 1544 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| C 17 | U 2943708 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | Met 121 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 2230716.6 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 744.1 | |
| All* | Total formula weight | 2231460.7 |
