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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5UQ7

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ("in" conformation)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A23S rRNApolymer2915948035.61GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
2B5S rRNApolymer12038882.21GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3D50S ribosomal protein L2polymer27530401.41UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4E50S ribosomal protein L3polymer20422250.01UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5F50S ribosomal protein L4polymer20322512.01UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
6G50S ribosomal protein L5polymer18120930.41UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
7H50S ribosomal protein L6polymer17318893.11UniProt (Q5SHQ3)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8I50S ribosomal protein L9polymer14616164.91UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9N50S ribosomal protein L13polymer14015927.91UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10O50S ribosomal protein L14polymer12213323.61UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11P50S ribosomal protein L15polymer14916248.11UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12Q50S ribosomal protein L16polymer14115993.91UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
13R50S ribosomal protein L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14S50S ribosomal protein L18polymer11012437.61UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15T50S ribosomal protein L19polymer13115503.01UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16U50S ribosomal protein L20polymer11613591.01UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17V50S ribosomal protein L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18W50S ribosomal protein L22polymer11212678.91UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19X50S ribosomal protein L23polymer9510646.61UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20Y50S ribosomal protein L24polymer10711726.31UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21Z50S ribosomal protein L25polymer18721139.31UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
22050S ribosomal protein L27polymer778689.01UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
23150S ribosomal protein L28polymer9710873.01UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
24250S ribosomal protein L29polymer708485.11UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
25350S ribosomal protein L30polymer596667.91UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26450S ribosomal protein L31polymer698086.31UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
27550S ribosomal protein L32polymer596590.91UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28650S ribosomal protein L33polymer536501.71UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
29750S ribosomal protein L34polymer485975.31UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
30850S ribosomal protein L35polymer647375.01UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
31950S ribosomal protein L36polymer374435.41UniProt (Q5SHR2)
Pfam (PF00444)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
32a16S rRNApolymer1521493903.71GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
33b30S ribosomal protein S2polymer23126646.91UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
34c30S ribosomal protein S3polymer20622862.41UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
35d30S ribosomal protein S4polymer20824242.31UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
36e30S ribosomal protein S5polymer14816144.81UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
37f30S ribosomal protein S6polymer10011917.71UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
38g30S ribosomal protein S7polymer15517919.81UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
39h30S ribosomal protein S8polymer13715737.41UniProt (Q5SHQ2)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
40i30S ribosomal protein S9polymer12614122.21UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
41j30S ribosomal protein S10polymer9611056.81UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
42k30S ribosomal protein S11polymer11412032.71UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
43l30S ribosomal protein S12polymer12213650.21UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
44m30S ribosomal protein S13polymer11413067.21UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
45n30S ribosomal protein S14 type Zpolymer607027.51UniProt (Q5SHQ1)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
46o30S ribosomal protein S15polymer8810447.21UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47p30S ribosomal protein S16polymer829795.41UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48q30S ribosomal protein S17polymer9911722.91UniProt (Q5SHP7)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
49r30S ribosomal protein S18polymer687897.51UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
50s30S ribosomal protein S19polymer839456.01UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
51t30S ribosomal protein S20polymer9810876.11UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
52u30S ribosomal protein Thxpolymer232831.31UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
53yP-site tRNA fMetpolymer7724801.81GenBank (1126835761)Escherichia coli K-12
54C50S ribosomal protein L1polymer22624513.21UniProt (Q5SLP7)
Pfam (PF00687)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
55zE-site tRNA Phepolymer7624485.51GenBank (1126835761)Escherichia coli K-12
56xmessenger RNApolymer5517773.71synthetic construct
57Y, 4, 5, 6, 9...ZINC IONnon-polymer65.46Chemie (ZN)
58dIRON/SULFUR CLUSTERnon-polymer351.61Chemie (SF4)
Sequence modifications
a: 1 - 1541 (GenBank: 55771382)
PDBExternal DatabaseDetails
G 1542-insertion
C 1543-insertion
U 1544-insertion
y: 1 - 76 (GenBank: 1126835761)
PDBExternal DatabaseDetails
C 17U 2943708conflict
C: 2 - 228 (UniProt: Q5SLP7)
PDBExternal DatabaseDetails
-Met 121deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains56
Total formula weight2230716.6
Non-Polymers*Number of molecules7
Total formula weight744.1
All*Total formula weight2231460.7
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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